Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0078 ATGTCCACCGCGCCTGTAAATCCCGCTTCCGTTTCTTCCTCAACTTCTGCAAGCGACGCGGAGACTCTCCGGCGAGGCCGTATCCTCTCAAGCAAGCTCTACTTCGATGTGCCTCTCACTAAGGTTCCAATTATTTACTCGTCGTCGTACGACATTGCGTTTCTTGGCATGGAAAAACTGCACCCATTTGATTCTTCTAAGTGGGGTCGCATATGCCGGTTCCTTATCTTGGATGGTGCTTTGGAGAAAAACCATATTGTTGAGCCTCTGGAAGCTTCAAAGGATGATCTCCTAGTGGTACATTCAGAATCATACTTGAATAGTCTGAAAACCAGTCTCAATGTTGCTGTTATAATTGAGGTCCCCCCTGTTGCATTACTGCCCAATTGTCTTGTGCAGCAGAAAGTTCTTTATCCATTTCGCAAGCAGGTTGGGGGAACCATTTTGGCTGCAAAGCTTGCAAAAGAGCGAGGATGGGCCATCAATGTCGGTGGAGGGTTCCATCACTGTTCTGCAGGAAAAGGTGGTGGATTCTGTGCTTATGCAGATATTTCTCTTTGCATACACTATGCCTTTATCCGGTTGAATATTTCTAGGGTGATGATAATTGATCTTGATGCACATCAAGGAAATGGCCATGAATTGGATTTTTCCAATGACAGACGAGTTTATATTCTGGATATGTACAACCCTGGGATATATCCATCTGATTTTGAGGCAAGGAGATATATTGATCAGAAGGTTGAAGTAGTGAGTGGGACCACAACTAATGAGTACCTGACAAAATTAGATGAAGCACTCAAGGTTGCTGGACGCATGTTTGATCCTGAGTTGGTGGTGTATAATGCTGGCACTGATATCCTAGATGGAGATCCACTGGGAAGGTTGAAGATCAGTCCTGAAGGGGTAACTAGTAGAGATGAGAAGGTTTTCAGATTTGCTCGTGAGAAGAAAATTCCTCTCATCATGCTCACATCAGGTGGTTATATGAAATCCAGTGCCAAAGTAATAGCAGATTCAATAGTAAACCTGTCGAGGAAATGCTTGATAGACACTGGGAGTTCTCATTCCCGGGGTTAA 1080 0.4426 MSTAPVNPASVSSSTSASDAETLRRGRILSSKLYFDVPLTKVPIIYSSSYDIAFLGMEKLHPFDSSKWGRICRFLILDGALEKNHIVEPLEASKDDLLVVHSESYLNSLKTSLNVAVIIEVPPVALLPNCLVQQKVLYPFRKQVGGTILAAKLAKERGWAINVGGGFHHCSAGKGGGFCAYADISLCIHYAFIRLNISRVMIIDLDAHQGNGHELDFSNDRRVYILDMYNPGIYPSDFEARRYIDQKVEVVSGTTTNEYLTKLDEALKVAGRMFDPELVVYNAGTDILDGDPLGRLKISPEGVTSRDEKVFRFAREKKIPLIMLTSGGYMKSSAKVIADSIVNLSRKCLIDTGSSHSRG* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0078 359 Gene3D Histone deacetylase domain 40 356 IPR037138 -
Vvi4g0078 359 PANTHER HISTONE DEACETYLASE 2-RELATED 60 344 - -
Vvi4g0078 359 FunFam Histone deacetylase 11 42 351 - -
Vvi4g0078 359 CDD HDAC_classIV 61 344 IPR044150 GO:0004407|GO:0016575
Vvi4g0078 359 PRINTS Histone deacetylase superfamily signature 276 286 IPR000286 -
Vvi4g0078 359 PRINTS Histone deacetylase superfamily signature 165 188 IPR000286 -
Vvi4g0078 359 PRINTS Histone deacetylase superfamily signature 199 214 IPR000286 -
Vvi4g0078 359 SUPERFAMILY Arginase/deacetylase 40 344 IPR023696 -
Vvi4g0078 359 Pfam Histone deacetylase domain 65 342 IPR023801 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0078 K11418 - vvi:100264550 694.886