Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0071 ATGGCGGATTATTCACCAAGCAGGCATCCTGAGTTCCACTATAAAACCGAGTTTCAGAGCCATGAACCAGAGTTTGACTATCTCAAGAGCTTGGAAATTGAGGAGAAAATCAACAAGATTAGATGGTGTCAGACAGCTAACAGCGCACTGTTTCTTCTCTCCACTAATGATAAAACCATCAAATTCTGGAAGGTCCAAGAGAAGAAGGTCAAGAAAGTATGTGACATGAATGTTGACCCTTCAAAAGCTTTGGGAAATGGTATTGTTTGTTCAAGTATATCAACAAGCTCCAAACCATGTATTGCAAATGGAGGATGTGTCAACAGAACCTTCAATTATTTGAGCACTGACTTTTCATTTCCACCTGGGGGAATACCATTCCTACATTTGCCCAGGGTGATGAGTCATGAGACAAGCTCAGTGGCCAGGTGTCGGAGAATTTATGCTCATGCCCATGACTATCATATCAATTCCATTTCAAATAACAGTGATGGTGAAACTTTTATATCAGCTGATGATCTCCGGATAAATCTCTGGAACTTGGAAATTAGCAGTCAAAGTTTCAACATTGTTGATGTGAAGCCTGCAAACATGGAGGATCTAACTGAGGTTATAACTTCAGCAGAATTTCATCCTTCCCACTGCAATATGTTAGCATATAGTAGCTCAAAAGGCTCAATCCGTCTTATTGATTTGCGGCAATCAGCTTTATGTGATACACATTGCAAATTGTTTGAGGAACTGGAGGCATCTACTTCAAGATCTTTTTTTACAGAGATAATTGCCTCAATTTCTGATATAAAGTTTTCAAAGGATGGAAGACATTTACTTAGTCGTGATTATATGACACTTAAGTTGTGGGACATAAATATGGAGTCTGTGCCAGTCGCAACTTTCCAAGTTCATGAGCATTTAAGACCTAAGCTGTGTGATTTATATGAAAATGATTCTATCTTCGACAAATTTGAGTGTTGTCTGAGTGGAGATGGACTACGAGTGGCGACTGGTTCCTACAGTAATCTATTTCGTGTATTTGGTTGTTCTGAAGGCAGCACAGAAGCCACAACTTTGGAAGCCAATAAAAATCCCATGATGAGGCAAGTCCAGACCCCCTCAAGGCCTTCTAGATCCCTGGGCTCTCTATCTCGTGTTGGCAGGCGAGATAGTTCTGGAGCTGACACAAATGGAAACGCTTTTGATTTCATGACAAAGTTGCTCCATTTAGCCTGGCATCCAACTGAAAACTCCCTAGCTTGCGCCACTTCAAACAGCCTGTACATGTACTATGCATAA 1293 0.4084 MADYSPSRHPEFHYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQTANSALFLLSTNDKTIKFWKVQEKKVKKVCDMNVDPSKALGNGIVCSSISTSSKPCIANGGCVNRTFNYLSTDFSFPPGGIPFLHLPRVMSHETSSVARCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITSAEFHPSHCNMLAYSSSKGSIRLIDLRQSALCDTHCKLFEELEASTSRSFFTEIIASISDIKFSKDGRHLLSRDYMTLKLWDINMESVPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCSEGSTEATTLEANKNPMMRQVQTPSRPSRSLGSLSRVGRRDSSGADTNGNAFDFMTKLLHLAWHPTENSLACATSNSLYMYYA* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0071 430 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 40 68 IPR000009 GO:0000159|GO:0019888
Vvi4g0071 430 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 265 292 IPR000009 GO:0000159|GO:0019888
Vvi4g0071 430 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 399 428 IPR000009 GO:0000159|GO:0019888
Vvi4g0071 430 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 208 236 IPR000009 GO:0000159|GO:0019888
Vvi4g0071 430 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 11 39 IPR000009 GO:0000159|GO:0019888
Vvi4g0071 430 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 293 318 IPR000009 GO:0000159|GO:0019888
Vvi4g0071 430 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 180 207 IPR000009 GO:0000159|GO:0019888
Vvi4g0071 430 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 152 179 IPR000009 GO:0000159|GO:0019888
Vvi4g0071 430 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 319 345 IPR000009 GO:0000159|GO:0019888
Vvi4g0071 430 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 237 264 IPR000009 GO:0000159|GO:0019888
Vvi4g0071 430 PIRSF PPA2_B55 2 430 IPR000009 GO:0000159|GO:0019888
Vvi4g0071 430 SMART WD40_4 24 64 IPR001680 GO:0005515
Vvi4g0071 430 SMART WD40_4 141 180 IPR001680 GO:0005515
Vvi4g0071 430 SMART WD40_4 250 288 IPR001680 GO:0005515
Vvi4g0071 430 SMART WD40_4 292 346 IPR001680 GO:0005515
Vvi4g0071 430 SMART WD40_4 191 231 IPR001680 GO:0005515
Vvi4g0071 430 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 137 240 - -
Vvi4g0071 430 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 1 115 - -
Vvi4g0071 430 Pfam WD domain, G-beta repeat 144 180 IPR001680 GO:0005515
Vvi4g0071 430 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 3 430 IPR000009 GO:0000159|GO:0019888
Vvi4g0071 430 MobiDBLite consensus disorder prediction 365 391 - -
Vvi4g0071 430 SUPERFAMILY WD40 repeat-like 19 424 IPR036322 GO:0005515
Vvi4g0071 430 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 24 38 IPR018067 -
Vvi4g0071 430 Gene3D - 3 428 IPR015943 GO:0005515
Vvi4g0071 430 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 2. 150 164 IPR018067 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0071 Vvi-Chr4 716986 722925 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0071 K04354 - vvi:100257641 847.81