Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0069 ATGGCTGAAGAAGTACAGTACTCGTCTGGTACGGACGCTACCAACAAGCGTAAGTACGAGGACCAAACGACGCCGTCTCAGCCATCCACTCGCCGCCCCACCGGCTTCTCGGCTCCGATCTCCACTCCCTCTCCAGACTCCTCTCACGCCCCGCCCTCATACAACAGTGTTCCGCCTCCCGCAGATGAGATCCAGCTCGCCAAGCAGCGCGCGCAGGAGATCGCTGCTCGCCTTTTCAGCAACGCCAGCAACACCGAAGCTAAGCGCCCTCGCGTCGAGAATGGTGCCGGTGCTGGTGGGTTTGATTCTGGTGATAAGGGGTTCAGCTCTGCTCCTTCTGATGTTGGACAGAAGCCTATGATCTCGACTCCTTCGGCAATTCCAGTTTCTTATGGTTACCAGGGTACGAGCAAAAAGATTGATATCCCGAATGGGAGGGTTGGTGTTATTATTGGGAAAGGTGGAGAGACTATCAAGTATCTTCAGCTTCAGTCTGGAGCTAAGATTCAGGTCACTAGGGATATGGATGCGGATCCTAATTCCCCAACCCGGTTGGTGGAGCTCATGGGTACTCCGGACCAAATTGCGAAGGCAGAGCAATTGATTAACGATGTTCTTTCTGAGGCTGAAGCAGGGGGGTCTGGCATAGTTTCTCGAAGGCTAACTGGTCAGGCTGGGTCTGAACAATTTGTGATGAAAGTACCAAACAACAAGGTTGGTCTGATAATTGGTAAAGGTGGTGAGACCATTAAAAATATGCAAGCCAGGACAGGAGCTCGTATTCAGGTGATACCTTTGCATCTCCCCCCTGGTGATACATCAATGGAGAGAACTGTACAAATAGATGGCACCAGTGAACAGATTGAGTCTGCTAAACAGTTGGTCAATGAAGTCATCAGTGAGAATCGTATCAGAAATCCAGCAATGGCTGGAGGATATCCTCAGCAAGGCTACCAAGCCCGACCTCCATCGGGCTGGGGTGCCCCTCCTGGTGCTCCTCCAATGCAGCAACCTGGTTATAGCTATGCGCAGCCTGGATCCTATCCTGGTCCTTCACCCCAGTATAACATGTCTCAGCCAGCTTATGCCGGCTATTCTCAGCCTAATGCCACTGGTTGGGACCAGACGGCTGCCCCACCAAGTCAGCAGACAACTCCAGGAAGTGGCTATGATTACTATGGCCAACAGCAGACTCAACAGCAGCAGCAAGCCCATGGTGGTCCTTCTGGTCCAGCTGATAACTCTGGTTACAATTACAATCAACCACCAGCTTCTGGATATAATCAACAGGGGCAAGGTTATCCTCAGGATGGCTATGGTGGTGGGTATCACGCACCTGCTCCTCAACCTGGCTATGGTCAGCCTCAACCAATTCCAGGATATGATCAGCAGCAAGGTTATAATTCTGCAACTGGTTATGGTAATGTGGCCAACCCAACACAAGAGGGGCACACTACCTCCTATGGAGCTCAAGGGGAGACTGGTCAAGCACCACCTTCTGTCCAGCCCTCTGCAATTGGTCAGCAAGGATACAACACTCAGCAGCCTAGTCCAAGCCCTGCAAGTTATCCACCTCAAGGATCTAATCAGCCAGCGTATGGGATGCCCCCAACTTCCCAAACTGGTTTTGGGAGTCAACCACCAGCCCAGTCTGGCTATACCACCAACTATGGACCACCACAGGCTCAGAAGGCACCAGCCAATCCACCAGTTTATGGACAAACCCAACAGTCCCCCAGTGCCCAGGGAGGCTATGCCCAGCCTGCTCCTGTGCAGCCTGGTTATCCCCATTCTCAGCAGCCGCCTGCTCAGTCTGGGTATGCTCAAACTGATTCCAGTTCCCAGCGAGCTGCACCGTCCAGTTATGGAACAGCAGCTGGTCAGCCAGGGTATGGAGGACCTTCAGCTTACAGTGCACCAACAGTGACTCAGGCAGGTTATGGGCAGCAGCCCCCATACAGTGGCTCATATGGTGGCGGTTATTCACAGCCTCCAATGTATGCTGCGGATGCAACTCCAACTTCTCAGCCTGCACAACAGAGTGGGGTTGCCAAAACATCGCCCCAGAGCTGA 2073 0.5292 MAEEVQYSSGTDATNKRKYEDQTTPSQPSTRRPTGFSAPISTPSPDSSHAPPSYNSVPPPADEIQLAKQRAQEIAARLFSNASNTEAKRPRVENGAGAGGFDSGDKGFSSAPSDVGQKPMISTPSAIPVSYGYQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPTRLVELMGTPDQIAKAEQLINDVLSEAEAGGSGIVSRRLTGQAGSEQFVMKVPNNKVGLIIGKGGETIKNMQARTGARIQVIPLHLPPGDTSMERTVQIDGTSEQIESAKQLVNEVISENRIRNPAMAGGYPQQGYQARPPSGWGAPPGAPPMQQPGYSYAQPGSYPGPSPQYNMSQPAYAGYSQPNATGWDQTAAPPSQQTTPGSGYDYYGQQQTQQQQQAHGGPSGPADNSGYNYNQPPASGYNQQGQGYPQDGYGGGYHAPAPQPGYGQPQPIPGYDQQQGYNSATGYGNVANPTQEGHTTSYGAQGETGQAPPSVQPSAIGQQGYNTQQPSPSPASYPPQGSNQPAYGMPPTSQTGFGSQPPAQSGYTTNYGPPQAQKAPANPPVYGQTQQSPSAQGGYAQPAPVQPGYPHSQQPPAQSGYAQTDSSSQRAAPSSYGTAAGQPGYGGPSAYSAPTVTQAGYGQQPPYSGSYGGGYSQPPMYAADATPTSQPAQQSGVAKTSPQS* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0069 690 ProSiteProfiles Type-1 KH domain profile. 135 202 - -
Vvi4g0069 690 MobiDBLite consensus disorder prediction 307 690 - -
Vvi4g0069 690 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 137 213 IPR036612 GO:0003723
Vvi4g0069 690 Gene3D K Homology domain, type 1 223 327 IPR036612 GO:0003723
Vvi4g0069 690 Gene3D K Homology domain, type 1 131 222 IPR036612 GO:0003723
Vvi4g0069 690 MobiDBLite consensus disorder prediction 340 435 - -
Vvi4g0069 690 MobiDBLite consensus disorder prediction 637 657 - -
Vvi4g0069 690 FunFam KH domain-containing protein 223 322 - -
Vvi4g0069 690 Pfam KH domain 139 204 IPR004088 GO:0003723
Vvi4g0069 690 Pfam KH domain 231 297 IPR004088 GO:0003723
Vvi4g0069 690 MobiDBLite consensus disorder prediction 668 690 - -
Vvi4g0069 690 MobiDBLite consensus disorder prediction 458 517 - -
Vvi4g0069 690 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 225 306 IPR036612 GO:0003723
Vvi4g0069 690 SMART kh_6 134 207 IPR004087 GO:0003676
Vvi4g0069 690 SMART kh_6 226 300 IPR004087 GO:0003676
Vvi4g0069 690 ProSiteProfiles Type-1 KH domain profile. 227 295 - -
Vvi4g0069 690 MobiDBLite consensus disorder prediction 526 585 - -
Vvi4g0069 690 MobiDBLite consensus disorder prediction 598 622 - -
Vvi4g0069 690 MobiDBLite consensus disorder prediction 1 121 - -
Vvi4g0069 690 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 129 511 - -
Vvi4g0069 690 MobiDBLite consensus disorder prediction 20 51 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0069 K13210 - vvi:100259454 1280.77