Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0064 ATGCAGGCTTGTAGTGGAACTGCTGCTATGGGTTCTCTGCAACAGCCCATTTGGATTAAGGGGTCAAGTTTTGCTCCAAATGGGTCTACTGTCAATGGGTTCCCACACCAAATTAAACTGAACTCGGTTAAGCCATGTAGATCTTATATCAAAGGAAGCTTGGTTACTGGGAAGCCACCTTCCTCTGTGTCTGTCACTGTGCCTGGAAATGGGGATAGTGGAGTCAATTTTATTGACCATGGCTTGAATGAAGCTGATCCTGAAGTGTGTGCAATTATTTACAAGGAAAAGCAACGGCAAATGAAAAGCTTAGAACTTATTGCCTCAGAGAATTTCACATCCCGGGCAGTGATGGAAGCTGTTGGTTCTTGCCTCACAAACAAATATTCTGAGGGATTGCCTGGTAAAAGGTACTATGGTGGTAATGAGTTCATTGATGAGCTGGAAACTCTGTGTCAGAAGAGGGCTTTGGCAGCATTCCACTTAGATGGAAAGAAGTGGGGTGTCAATGTTCAACCATTGTCTGGTTCTCCAGCTAACTTTGAAGTATACACTGCCCTTCTCAATCCACATGACAGAATCATGGGCTTGGACTTACCTCATGGGGGCCACTTGTCTCATGGTTTCATGACTCCTAAAAGACGGGTATCAGGCACATCAATTTATTTTGAGTCTATGCCTTATCGACTTGATGAATCTACAGGTCTTGTTGATTATGACATGCTTGAGAAAACAGCTAATCTTTTTCGACCAAAACTCATTATTGCTGGTGCTAGTGCTTATCCTCGAGATTTTGATTATCCTCGTATGAGGAAGATTGCAGATGGTGTTGGTGCTTTTCTCATGATGGATATGGCTCACATTAGTGGACTTGTTGCTGCTTCTGTGGTTGCTGACCCCTTTGAGTACTGTGATATTGTGACAACAACAACACACAAGTCTCTTAGAGGTCCTAGAGGTGGCATGATCTTCTTCAAGAAAGATTCTGTTCTGGGAGTTGACTTAGAATCTGCCATCAACAATGCTGTTTTTCCAGGTTTACAGGGTGGTCCGCATAACCACACAATCGGGGGACTTTCAGTCTGCTTAAAGCATGCCCAATCCCCAGAATTCAAGGCTTACCAGAACCAGGTAGTGTCAAACTGTAGAGCTCTTGCTGGCCGGTTAATCGAATTGGGATATAACCTGGTTTCCGGGGGAAGTGATAACCACCTTATTCTTGTGGATCTTAGGCCATTGTAA 1242 0.4396 MQACSGTAAMGSLQQPIWIKGSSFAPNGSTVNGFPHQIKLNSVKPCRSYIKGSLVTGKPPSSVSVTVPGNGDSGVNFIDHGLNEADPEVCAIIYKEKQRQMKSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGGNEFIDELETLCQKRALAAFHLDGKKWGVNVQPLSGSPANFEVYTALLNPHDRIMGLDLPHGGHLSHGFMTPKRRVSGTSIYFESMPYRLDESTGLVDYDMLEKTANLFRPKLIIAGASAYPRDFDYPRMRKIADGVGAFLMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRGGMIFFKKDSVLGVDLESAINNAVFPGLQGGPHNHTIGGLSVCLKHAQSPEFKAYQNQVVSNCRALAGRLIELGYNLVSGGSDNHLILVDLRPL* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0064 413 Gene3D Aspartate Aminotransferase, domain 1 86 412 IPR015422 GO:0003824
Vvi4g0064 413 Gene3D - 111 376 IPR015421 GO:0003824
Vvi4g0064 413 FunFam Serine hydroxymethyltransferase 111 376 - -
Vvi4g0064 413 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 80 413 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vvi4g0064 413 SUPERFAMILY PLP-dependent transferases 78 412 IPR015424 -
Vvi4g0064 413 PIRSF SHMT 75 413 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vvi4g0064 413 CDD SHMT 84 413 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vvi4g0064 413 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 305 321 IPR019798 GO:0030170
Vvi4g0064 413 Pfam Serine hydroxymethyltransferase 82 412 IPR039429 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0064 Vvi-Chr4 676963 680250 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0064 K00600 - vvi:100250728 840.491