Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0056 ATGCAATCAAGGGCGTTGTCGACTGAGGAAGGGAAGGATCCTGCAAATACAAGCAGAACAAATCAATCCAGGGTTTTGCCTCTAAGGCTGCTTCAGATATTTGGGCTGTTTCTGGCTCTCTGTGTCGCGTTTTCAGTCATTAGTGTATACATGATTAAACGTTTTGGAGTTTCTACTACATTGACATCGCCGCAGTCTAGTTTCCAGCCCTGCTATGAGGAGGTGGGTGGCTTAGATCGGTGGATTAAGCCTCCTTCAACTTTGCTCCATACAATGAATGACACAGAGCTTCTCTGGAGGGCATCTTTTGCCCCTAAGGTGAAGAAGTACCCATTTCAGAGAGTTCCAAAGGTTGCATTCATGTTCTTGACTAAGGGCCCATTGCCGCTGGGACCTCTCTGGGAGAGGTTTTTGAAGGGGCATGAAGGGCTTTATTCAATCTACATTCATTCGACGCCATCATTCCAGGCCAATTTCCCTGCCTCATCGGTTTTCTATAGGAGACAGATACCAAGCAAGGTGGCAGAGTGGGGGAGGATGAGTATGTGTGATGCAGAGAGAAGGCTCCTCGCAAATGCATTGCTTGATATCTCCAATGAACGGTTCGTTCTTCTTTCTGAATCATGCATTCCTCTCTACAATTTCACCCTCATCTACCACTACATAATGAAGTCCAAATATAGCTTCATGGGTGCATTTGATGACCCTGGGCCATATGGAAGGGGTCGGTATAATGGGAATATGAAACCTGAGGTGAGCATTTCCCAGTGGCGTAAAGGAGCCCAATGGTTTGAAGTTAACCGAAAACTTGCAGTCAACATAGTAGAAGATACCACGTTCTACAAGAAGTTTGAGGAGTTCTGCAAACCAGCATGCTATGTGGATGAGCACTACTTCCCCACCATGCTAACCATTCAATCAGGACACCTTATAGCAAACAGAAGCATTACTTGGGTCGATTGGTCAAGAGGCGGTGCTCACCCTGCTACCTTTGGGAAAGCAGATATCACAGAGGAGTTTCTACACAGAGTTGTCAGCAATCACAAGTGCCTCTACAACAATCAGCCTTCCTCTACTTGTTTTCTTTTTGCAAGAAAGTTTGCTCCCAGTACCCTGGAACCTCTGTTACAGTTGGCACACAAACACTTAGGGTTTTGA 1158 0.4594 MQSRALSTEEGKDPANTSRTNQSRVLPLRLLQIFGLFLALCVAFSVISVYMIKRFGVSTTLTSPQSSFQPCYEEVGGLDRWIKPPSTLLHTMNDTELLWRASFAPKVKKYPFQRVPKVAFMFLTKGPLPLGPLWERFLKGHEGLYSIYIHSTPSFQANFPASSVFYRRQIPSKVAEWGRMSMCDAERRLLANALLDISNERFVLLSESCIPLYNFTLIYHYIMKSKYSFMGAFDDPGPYGRGRYNGNMKPEVSISQWRKGAQWFEVNRKLAVNIVEDTTFYKKFEEFCKPACYVDEHYFPTMLTIQSGHLIANRSITWVDWSRGGAHPATFGKADITEEFLHRVVSNHKCLYNNQPSSTCFLFARKFAPSTLEPLLQLAHKHLGF* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0056 385 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 49 377 IPR044174 GO:0016757
Vvi4g0056 385 Pfam Core-2/I-Branching enzyme 118 344 IPR003406 GO:0016020|GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0056 Vvi-Chr4 623331 627212 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0056 - - vvi:100249300 798.89