Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0052 ATGCCAAACACGCCCCTAAATGAAAATACATATGCCCAAAAGGGGGTTCAGAAGAAAATTGGTCTGTTTGGATGGTCCGATCACATGGCTTCACCTTCTCCGTCTCAACCTACATACATTCCTATGCCATCAGACCCAGGTGGCAAACCCATAGATCATGAAGGTCTCTTGCCACTGGTCCCTATCCACATTGTCACCCTTCCATCTCAACTTCCAATTGAATTCCTGGAGCCCTCTCCTGAAAGGAAATTGGTCATTGGTTTTGATTGTGAAGGTGTTGACCTATGTCGCCATGGAACACTTTGTATCATGCAGATTGCTTTTCCAGATGCTATTTATCTGGTTGATGCTATTCAGGGGGGAGAGATGCTTATGAAAGCCTGTAAGCCTGCACTTGAATCTAGTTACATCACAAAAGTTATTCACGATTGCAAACGAGATAGCGAGGCATTGTATTTTCAATTTGGCATCAAGCTGCACAATGTTGTGGATACCCAAATTGCCTATTCTCTAATAGAGGAGCAGGAAGGACGGAAAAGATTGGTGGATGACTACATATCATTTGTTGGCCTCCTAGCAGATCCACGCTATTGTGGTGTATCCTATCTTGAGAAGCAAGAAGTTCGTGACCTCTTAAGGCAGAACCCTGATTTTTGGACGCACAGACCCTTATCTGACCTGATGGTCCGGGCAGCTGCAGACGATGTACGTTTCCTTCTTTACATCTATCACAAGATGATGGAAAAATTGAATGAACGATCCTTATGGTATCTTGCTGTTCGTGGTGCACTGTATTGCCGATGTTTCTGCATCAATGATAATGATTATGCTGATTGGCCACCTCTCCCTCCCATTCCAGAAGGAAATGCTCCAGAGGAAGAAATCCTCTCGGTTCTTCATGTTCCCCCTGGAAAAATGGGTCGTGTTATTGGAAGACGAGGAGCTTCCATTTTGTCAGTCAAGGAATCTTGCAATGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAGGTGTTCATCATCGGACCGGTGAAGCAGGTGAGGAAAGCAGAAGCCATATTAAGGGGACGAATGCTGGAAATGTATTGA 1095 0.4521 MPNTPLNENTYAQKGVQKKIGLFGWSDHMASPSPSQPTYIPMPSDPGGKPIDHEGLLPLVPIHIVTLPSQLPIEFLEPSPERKLVIGFDCEGVDLCRHGTLCIMQIAFPDAIYLVDAIQGGEMLMKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRLVDDYISFVGLLADPRYCGVSYLEKQEVRDLLRQNPDFWTHRPLSDLMVRAAADDVRFLLYIYHKMMEKLNERSLWYLAVRGALYCRCFCINDNDYADWPPLPPIPEGNAPEEEILSVLHVPPGKMGRVIGRRGASILSVKESCNAEILIGGAKGPPDKVFIIGPVKQVRKAEAILRGRMLEMY* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0052 364 CDD KH-I 298 357 - -
Vvi4g0052 364 PANTHER EGALITARIAN, ISOFORM B 43 361 - -
Vvi4g0052 364 Gene3D - 3 265 IPR036397 GO:0003676
Vvi4g0052 364 SMART 35exoneu6 62 251 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vvi4g0052 364 SMART kh_6 293 361 IPR004087 GO:0003676
Vvi4g0052 364 Pfam 3'-5' exonuclease 83 250 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vvi4g0052 364 Gene3D K Homology domain, type 1 286 361 IPR036612 GO:0003723
Vvi4g0052 364 SUPERFAMILY Ribonuclease H-like 60 279 IPR012337 -
Vvi4g0052 364 CDD Egl_like_exo 75 270 - -
Vvi4g0052 364 Pfam KH domain 299 356 IPR004088 GO:0003723
Vvi4g0052 364 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 292 362 IPR036612 GO:0003723
Vvi4g0052 364 ProSiteProfiles Type-1 KH domain profile. 294 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0052 Vvi-Chr4 580677 586970 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0052 K18740 - vvi:100259526 686.026