Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0047 ATGAAAGAACCAGTGGTGGAGAGCTCACAACACCCAAATTATCCACTCCCTGTTGTTCACTTTTTCCCATCACACTTTGTACCATTCAATCTTCATGAACATTTGATGGGCTCTGAGAAACATCATGGGCATGGGTTTCAGGCTAAACCTGAAATGGGATTTTCCAATCAGTTGTCCTACTCTCACCAATTCACCATCCAGGCTTTGCACATCTTCAGGTTTTCTTTCCCATCTGTTACTTCTGAGGACTGTGAGAGTCTCTATAAAGATCCATTCAAGCCATTCGCATGCTCGTCAGGAGCTCTACAAACCTTTGAGAATGATTACTCAGCAATGGAGGCGATGAAAATGAAAATTGGCAAATGTTCACATGGTGATTTATTCAAGATAGTCAATGCTTCTCAGGCACCCATTGGAGAGGATATATCCGCATCTGTTGCAGGTTTACAAGCAAGCAAAGCATCGCAGTTTAGTTTGTTATTGGAAAATCTTGATATTTTAGAGGAGATGTTTGCTGATTCTAACATGGTAAGGTTGGAAAGGGATATTATGGTGCAATTAGGAAGGCTTGGAGCTCTAAAACTATTCCAAATATGTCTATCCAGGACCCTCAAAACATCTACATCTTTTGATTTGTTTAGCGCTCCTACTGAGCATATTAGGGAGTGTCAAACAAATGGCACAGTGGATGATCACTTAGATAAAGTTGTTGTTCGCTCTGGGAAAAAGGAAGAAAGAAAATCAAAGAGAGAAAGAGCATTGGAAAAAGCTGACAACATATATGCTTTTCCATTGCCCTCAAAAACTATTCGTAAAGGTCCTGGCCGACCTAGTGTTTCTACCGTAAAGAGAACATTGAACTCTAGAAGGAAAAGATTGATGAATGCTAAGAACGAGGCAGAAATGTCAAAGGGAGTGAAGTTGGTTGCCAACTTGGAGAGAATCAGAGCAACTTTAGAAGAAGAAATTGGGCATGTGGCCAGCTTGAGTAACTGGGCAGAAGCTGCTGGAGTCGACAAGAAGGTGTTGCAACAACAATTGCAGTTTGGTTGGTATTGCAGAGATGAACTTTTAAGGAGTACACACTCCTTAGTCTTATACATTGCAAGAAACTACAGAGGAATGGGAGTAGCCTTTGAAGATATACTTCAGGCAGGGAATTTAGGTGTCCTGCAAGGTGCAGAACGGTTTGACCACACAAAGGGATACAGATTCTCGACCTATGTTCAGTACTGGATAAGAAAATCAATGTCAACTTTGGTGGCACGGCATGCTAGAGGGGTCAAAATTCCTTTTACATTAAACAGGGCAATAGGTCAGATACAGAAAGCTCGAAAGGCCCTTTACAAAAGCCATGGAAGATATCCAGATGATAATGAAATTGCAAAGTTCACTGGTCTATCTCTTGCTAAAATTAGATCAGCTGGAAATTGCCTAAGGGTTGTGGGTTCAACTGATCAAAGTTTCCAAGATTGTTGGGGTGCAACAATTCTGGAGTTTACACCAGATACATCAATAAAGAGCCCTGAAGAAGGTTTCATGCAGCAATGCAAGAGAAAAGACATTCACAATCTTCTGAAAGGTTTAGACCCAAGAGAGAGGCAAATTTTGGTGTTAAGATATGGTTTTGGGGAGCAACAGCGCAAGTCACTAGAAGAGATTGGGAGACGTTTCAATGTTAGCAAAGAGTGGATAAGGAAGTTAGAGAAAACAGCACTGGCAAATCTAAGGGATGAAGAAATCTGCCAAAATTTGAGACATTATGTGGATGTGTAG 1776 0.4105 MKEPVVESSQHPNYPLPVVHFFPSHFVPFNLHEHLMGSEKHHGHGFQAKPEMGFSNQLSYSHQFTIQALHIFRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQNLRHYVDV* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0047 591 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 493 583 IPR013324 -
Vvi4g0047 591 Gene3D - 427 480 IPR036388 -
Vvi4g0047 591 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 150 589 - -
Vvi4g0047 591 Coils Coil 283 303 - -
Vvi4g0047 591 Pfam Sigma-70 region 3 437 511 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vvi4g0047 591 Gene3D - 512 591 IPR036388 -
Vvi4g0047 591 Pfam Sigma-70, region 4 525 577 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vvi4g0047 591 PRINTS Major sigma-70 factor signature 565 576 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vvi4g0047 591 PRINTS Major sigma-70 factor signature 529 541 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vvi4g0047 591 PRINTS Major sigma-70 factor signature 550 565 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vvi4g0047 591 PRINTS Major sigma-70 factor signature 381 394 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vvi4g0047 591 PRINTS Major sigma-70 factor signature 405 413 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vvi4g0047 591 Pfam Sigma-70 region 2 357 426 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vvi4g0047 591 Gene3D - 238 426 - -
Vvi4g0047 591 NCBIfam sigma-70 family RNA polymerase sigma factor 354 578 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vvi4g0047 591 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 430 503 IPR013324 -
Vvi4g0047 591 CDD Sigma70_r4 519 577 - -
Vvi4g0047 591 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 289 426 IPR013325 GO:0003700|GO:0006352|GO:0006355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0047 K03093 - vvi:100252651 1021.15