Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0040 ATGGAATCTTCCAATAATGCTTCGACGACGAAAGTGATTACCGGCGACGCCGGATATGTACTTGAAGATGTTCCTCATTTGAATGATTACATCCAAGGGCTTCCCACTTATCCCAATCAGTTGCAGACGAACCCCGCATATTCAGTTGTTAAGCAGTACTTTGTTAATGTAGACGATTCTGTGGCTCAAAAGATCGTTTGTCACAAGAATAGTCCAAGAGGGACACATTTCCGACGGGCAGGGCCTCGCCAAAAGGTGTATTTTGAGTCAGATGAAGTGCACGCATGTATTGTAACATGTGGTGGTCTGTGCCCTGGGCTCAACACAGTCATCAGGGAAATTGTGTGTGGCCTTTCCCACATGTATGGCGTCACAAGGATCCTTGGGATAGATGGAGGATACAAAGGATTCTATTCTCGAAATACCATTCCTTTAACTCCCAAGGTTGTGAATGACATCCATAAACGTGGTGGTACTGTCCTTGGCACATCAAGAGGAGGCCATGATACCTCAAAGATAGTTGACAGCATTCAGGATCGTGGGATTAATCAGGTTTATATAATTGGAGGTGATGGAACACAGAAAGGAGCATCTGTGATTTTTGAGGAAATTAGACGCCGTGGTCTCAAAGTTGCAGTTGCTGGAATCCCCAAAACAATTGATAATGACATTCCAGTTATTGACAAATCGTTTGGTTTTGATACTGCTGTTGAAGAAGCACAGCGTGCCATTAATGCGGCACATGTTGAATCTGAAAGTATTGAGAATGGTATTGGCATGGTGAAGCTAATGGGACGCTACAGTGGATTCATTGCGATGTATGCTACACTTGCCAGTCGAGATGTAGACTGTTGTTTGATTCCAGAGTCACCATTCTATCTTGAAGGGAAAGGTGGACTTTTTGAATTTATAGAAAGACGTCTCAAAGAAAATGGACACATGGTTATTGTGATGGCTGAAGGAGCAGGACAGGAGCTTCTGTCAGAGAGCTTACTTTCCATGGGGCAAGATGCTTCAGGAAACAATCTGCTCCAAGACGTTGGACTCTGGATGTCTCATAGAATCAAGGATCATTTTGCAAGACAGCGTAAGATTGCCATTAATCTGAAGTATATAGATCCTACATACATGATCCGTGCTATTCCAGGCAATGCATCTGACAATGTGTACTGCACACTCCTTGCTCAAAGTGCTGTTCATGGAGCAATGGCAGGTTACACTGGCTTCACGATTGGGATTGTCAATGGAAGACATGCATACATTCCTTTCCATCGCATCAATGAGAGTCGGAACAAGGTTGTGATAACCGACAGGATGTGGGCAAGGCTCCTTTCGTCAACAAACCAGCCAAGCTTCCAGAACCCCAAAGATGTTGCTGAAGTCAAAAAAGAGGAAGCACCTGCCACTGGGTTGCTGGATGGGGATAACTCTAAAGATGACCACAAGCCAGTTGACCAAAAAGCATAA 1467 0.4431 MESSNNASTTKVITGDAGYVLEDVPHLNDYIQGLPTYPNQLQTNPAYSVVKQYFVNVDDSVAQKIVCHKNSPRGTHFRRAGPRQKVYFESDEVHACIVTCGGLCPGLNTVIREIVCGLSHMYGVTRILGIDGGYKGFYSRNTIPLTPKVVNDIHKRGGTVLGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIFEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVESESIENGIGMVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIERRLKENGHMVIVMAEGAGQELLSESLLSMGQDASGNNLLQDVGLWMSHRIKDHFARQRKIAINLKYIDPTYMIRAIPGNASDNVYCTLLAQSAVHGAMAGYTGFTIGIVNGRHAYIPFHRINESRNKVVITDRMWARLLSSTNQPSFQNPKDVAEVKKEEAPATGLLDGDNSKDDHKPVDQKA* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0040 488 PRINTS ATP-dependent phosphofructokinase family signature 253 269 IPR022953 GO:0003872|GO:0006002|GO:0006096
Vvi4g0040 488 PRINTS ATP-dependent phosphofructokinase family signature 97 116 IPR022953 GO:0003872|GO:0006002|GO:0006096
Vvi4g0040 488 PRINTS ATP-dependent phosphofructokinase family signature 181 197 IPR022953 GO:0003872|GO:0006002|GO:0006096
Vvi4g0040 488 PRINTS ATP-dependent phosphofructokinase family signature 232 250 IPR022953 GO:0003872|GO:0006002|GO:0006096
Vvi4g0040 488 PRINTS ATP-dependent phosphofructokinase family signature 310 322 IPR022953 GO:0003872|GO:0006002|GO:0006096
Vvi4g0040 488 PRINTS ATP-dependent phosphofructokinase family signature 214 231 IPR022953 GO:0003872|GO:0006002|GO:0006096
Vvi4g0040 488 Gene3D - 89 279 - -
Vvi4g0040 488 MobiDBLite consensus disorder prediction 457 488 - -
Vvi4g0040 488 Pfam Phosphofructokinase 96 400 IPR000023 GO:0003872|GO:0006096
Vvi4g0040 488 FunFam ATP-dependent 6-phosphofructokinase 89 279 - -
Vvi4g0040 488 PIRSF ATP_PFK_TP0108 1 457 IPR012004 GO:0003872|GO:0005524|GO:0006096
Vvi4g0040 488 SUPERFAMILY Phosphofructokinase 29 460 IPR035966 GO:0003872|GO:0006096
Vvi4g0040 488 MobiDBLite consensus disorder prediction 449 488 - -
Vvi4g0040 488 Hamap ATP-dependent 6-phosphofructokinase [pfkA]. 24 453 IPR012004 GO:0003872|GO:0005524|GO:0006096
Vvi4g0040 488 PANTHER ATP-DEPENDENT 6-PHOSPHOFRUCTOKINASE 1 5 459 - -
Vvi4g0040 488 FunFam Phosphofructokinase 233 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0040 Vvi-Chr4 458634 465940 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0040 K00850 - vvi:100245746 986.867