Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0037 ATGGCGCAGGTCCTCCAAATCCAAGCTCAGCTGATCACCTCTCCAATCCCCTCCTCCGTCGTCGACCCAAACCTCATCGCCGTCAAGCTCATTGGCGCTTGCGCCGACCACGCTAACGTGCGCCAGGCCGCTCTCATCTTCGCCCACCTCGCCAGCCCCAATATATTCGCCCACAACGCCACTCTCAAAGCTTTAGCTCAAAACAGTCACTGGTTCCATGCAATCCAGTTCTTTAACCACCAAGTTTCATCGCCCAATGCCCCGAACCCAGATGAGTTCACTTTCACTTCTGTGCTCAAGGCCTGTGCTGGCCTTGCCCACGTTGTCAACGGCCAGAAAATCCACGCCATGGTCACCAAACAAGGGTTTGAATCCAATCTCTTTGTTCGGAATTCGCTCATAGATATGTATTTCAAAGCGGGTTATCTTTTGCTTGCACGGCATCTGTTCGATGAAATGTTTGTGAGAGATAGGAATGTGGTTTGTTGGAATGCCATGATTGCAGGGTATGCACAGAATGAGAAGTACAGTGATGCTATTGAGGTGTTCCGGATGATGCAACAATTCGGTGGTGTGGTGCCAAATGATGTTACCCTTGTTAGTGTGTTGCCGGCTTGCGCGCATCTTGGTGCACTTGATCTGGGGAAGTGGATTGATGGATTTATCAGTCGGAGAGAGATGGCCTTGGGCTTGTTCTTGGGGAATGCACTGGCAGATATGTATGCAAAGTGTGGATGCATAACGGAGGCTAGAAGGGTATTCAATAAGATGGAAGAGAGAGATGTGATCTCATGGAGTATAATCATATGTGGGTTGGCCATGTACGGACATGCAGATGAAGCTTTTGGATGCTTTTATGAAATGCTGGACTGTGGAGAAAAGCCAAATGATGTTGTTTTCATGGGATTGTTAACAGCATGTACTCATGCAGGGTTGGTCAAGAAGGGGCTCAATTGTTTCAATACTATGGACAAGGAGTATGGAGTCAGCCCAAAGGTTGAACATTATGGTTGTGTGGTTGATCTTCTCAGCCGTGCTGGTGAACTCGACAAAGCAGAGGATATGATCAGCTCAATGCCTATGAAACCCAATGTCATAATTTGGGGTGCATTGCTTGGTGGTTGTCGGATTTACAGGGACAGTGGAAGAGGACAGCGAGTCGTTCAACATATTCTTGAGCTAGATTCTGACCATTCTGGAAGCTATGTTTATCTCGCCAATGTTTATTCTTCAATGGGTAGATTAGATGATGCTGCAAAGTGCAGGTTGAGAATGCGAGAGAATGGGGTGCTGAAAACCCCTGGATGCAGCTGGATAGAGGTGGACAACACAGTACATGAGTTCTTCATGGGAGATTTATCACACCCAGAGTCTAACAAGATATATTCAATGATAAGAGAATTAATGTGGAAAATGAAGCTAGCTGGGTACAAACCCAAAACTGACCTCGTAGTGCATAGCATTGATGAAGAAGAGAAGGAGGATGCTTTGTCAATTCACAGTGAGAAGTTGGCAATTGCATTTGGGCTTATCAGCACTAGTGAAGGAACCACAATTCGAGTTGTTAAGAATCTACGAATTTGTAATGACTGTCATGATGCAGCAAAGATAATTTCTGGGATTGTGAAGCGGGAGATTATTGTGCGGGATCGTAGCCGCTTCCATCATTTTAAAGATGGGAGTTTTTTGAGCAACAAGTGA 1701 0.4603 MAQVLQIQAQLITSPIPSSVVDPNLIAVKLIGACADHANVRQAALIFAHLASPNIFAHNATLKALAQNSHWFHAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIYSMIRELMWKMKLAGYKPKTDLVVHSIDEEEKEDALSIHSEKLAIAFGLISTSEGTTIRVVKNLRICNDCHDAAKIISGIVKREIIVRDRSRFHHFKDGSFLSNK* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0037 566 FunFam Pentatricopeptide (PPR) repeat-containing protein 325 487 - -
Vvi4g0037 566 SUPERFAMILY TPR-like 136 423 IPR011990 GO:0005515
Vvi4g0037 566 Gene3D Tetratricopeptide repeat domain 115 212 IPR011990 GO:0005515
Vvi4g0037 566 Gene3D Tetratricopeptide repeat domain 213 314 IPR011990 GO:0005515
Vvi4g0037 566 Gene3D Tetratricopeptide repeat domain 19 114 IPR011990 GO:0005515
Vvi4g0037 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Vvi4g0037 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Vvi4g0037 566 Pfam PPR repeat 263 292 IPR002885 -
Vvi4g0037 566 Pfam PPR repeat 335 360 IPR002885 -
Vvi4g0037 566 Pfam PPR repeat 131 154 IPR002885 -
Vvi4g0037 566 Pfam PPR repeat 235 261 IPR002885 -
Vvi4g0037 566 Pfam E motif 378 440 IPR046848 -
Vvi4g0037 566 Gene3D Tetratricopeptide repeat domain 315 480 IPR011990 GO:0005515
Vvi4g0037 566 FunFam Pentatricopeptide repeat-containing protein 56 214 - -
Vvi4g0037 566 Pfam E+ motif 445 472 IPR046849 -
Vvi4g0037 566 NCBIfam pentatricopeptide repeat 235 262 IPR002885 -
Vvi4g0037 566 NCBIfam pentatricopeptide repeat 263 296 IPR002885 -
Vvi4g0037 566 NCBIfam pentatricopeptide repeat 161 195 IPR002885 -
Vvi4g0037 566 Pfam PPR repeat family 158 207 IPR002885 -
Vvi4g0037 566 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 158 505 IPR046960 GO:0003723|GO:0009451
Vvi4g0037 566 FunFam Pentatricopeptide repeat-containing protein mitochondrial 215 324 - -
Vvi4g0037 566 Pfam DYW family of nucleic acid deaminases 476 561 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0037 Vvi-Chr4 415712 417970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0037 5 560 Glycoside Hydrolase AT3G49170 36.412 3.91e-125 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0037 - - vvi:104878976 903.279