Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0034 ATGCCTCCACTTCTATATCCTCTCCGCCGTACTCTCCGCCCTCCATTTCTCTTTCACCACCACCACCAAATGGCGCGTGTTCTCTCGCACGCTTCCCCCCTTCCCTGCCCCTCACCTCCATCCGCCGCCTTCGTCTCCAATCTGAGCTTCTCTCATTCTTCGATCCCTTTCCAAATCTCTTCTCCTTCTCCGAAATCTTCTATATTCGGTGCGGCGTTTCGTCTCGTGTGCCGAGAAAATGAGCGGTTTTCGAAACGGTTTGGCAGGATTTTGGCTTCGCAGAGGGGGTACCGGAAGCTGCGGCGGCGGCCGGCCAAGAGTAAGGCAAAGGAGTTGGAGCTCGGCGTCAAGATTTGCATCGAAGAAGAACTGCCTGACGATCCTGAAATTTTGAATATTGCAGAGATGCTTCGTCTAGATGTTCCAATAGCAATGAAGTTAGCATTTGAAGGTATAAAAGATTCAGAGTATAAAACAAGAGATACTACAATAAGTGATCTTGGTGGGTTTGAAAATGTTGAGTTGTCTGTACTTCTTTGCAATGATGAGTTCATTCGCAAACTCAACAAAGAATGGAGGGATGAGGACCATGCCACTGATGTTCTGTCCATGTCACAACATATACCTGAACTTAAGCTTCCAATTCTTATGTTAGGGGACATTGTAATCTCTGTTGAGACTGCTGCAAGACAAGCAGAAGAAAGAGGTCATACCCTTCTTGATGAGATACGCATCCTCATGGTCCATGGGTTGTTGCATCTTTTGGGATTTGATCACGAGATTAGTGATGAGGCCGAAGTGGAAATGGAAAAGGAGGAAGAACTTCTTTTGAAGAGTCTTGGGTGGAAGGGGAAAGGTTTGATTCAGAGTGCATATGATGCTGAAACTGATGGCAATTCTCATACAGAAAATTCAGATGACAGGAAAAAAGAAGGTAGTCTACGTTTCTATAAACCAAAGTTCAGCTATATCTTCTGTGATGTGGATGGTACAATGCTGAACAGCAAAAGTCAAATTACTGCAACTACCACGAAAGCCTTGAAGGAGGCCTTGTCAAGGGGTGTTAAAGTGGTAGTAGCTACTGGAAAAGCTCGTCCTGCTGTGATAACTGCATTAAAGGCAGTAGATTTAGTTGGAAAAGATGGAGTTATTTCAGAGTTCTCCCCTGGGGTTTTCATACAGGGACTGCTTGTTTATGGTAGACAAGGTCGGAAAATTTTTAAAAGGAATTTAGATCCAGATGTCTGCAGAGAGGCATTTCATTACTCTTGCAAGAGTGAAGTTCCTCTTGTTGCATTCAGTGAGGATCGTTTATTGACACTATTTGATCACCCTCTTGTTGAGTCACTTCACACTGTATATCATGAGCCAAAGGCAGAGATCATGCCTTCAGTTGAACACCTCTTGGCCATTGCTGAAATACAGAAAGTGCTTTTCTTAGACACTGCTGAGGGAGTGGCTACTGCTCTGCGGCCATACTGGTCAGAAGCAGTTGGAGGTCGTGCTAATGTTGTCCAATCACAGGCAGACATGCTTGAAATCGTCCCCCCAGGAACCTCAAAAGGAAGTGGAGTAAGAATGCTACTTGATCATTTGAATGTGCCAGCACAGGAGGTAATGGCTATTGGTGATGGAGAAAATGACATTGAAATGCTTGAATTAGCTTCTCTAGGCATTGCTCTCAGTAATGGTTCGGAGAAGACAAAAGCTGTGGCTAATGTGATTGGTCCCAGCAATGACGAAGATGGTGTAGCTGATGCTATCTACCGGTATGCATTCTGA 1782 0.4484 MPPLLYPLRRTLRPPFLFHHHHQMARVLSHASPLPCPSPPSAAFVSNLSFSHSSIPFQISSPSPKSSIFGAAFRLVCRENERFSKRFGRILASQRGYRKLRRRPAKSKAKELELGVKICIEEELPDDPEILNIAEMLRLDVPIAMKLAFEGIKDSEYKTRDTTISDLGGFENVELSVLLCNDEFIRKLNKEWRDEDHATDVLSMSQHIPELKLPILMLGDIVISVETAARQAEERGHTLLDEIRILMVHGLLHLLGFDHEISDEAEVEMEKEEELLLKSLGWKGKGLIQSAYDAETDGNSHTENSDDRKKEGSLRFYKPKFSYIFCDVDGTMLNSKSQITATTTKALKEALSRGVKVVVATGKARPAVITALKAVDLVGKDGVISEFSPGVFIQGLLVYGRQGRKIFKRNLDPDVCREAFHYSCKSEVPLVAFSEDRLLTLFDHPLVESLHTVYHEPKAEIMPSVEHLLAIAEIQKVLFLDTAEGVATALRPYWSEAVGGRANVVQSQADMLEIVPPGTSKGSGVRMLLDHLNVPAQEVMAIGDGENDIEMLELASLGIALSNGSEKTKAVANVIGPSNDEDGVADAIYRYAF* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0034 593 Hamap Endoribonuclease YbeY [ybeY]. 115 284 IPR002036 GO:0004222|GO:0006364
Vvi4g0034 593 SUPERFAMILY HAD-like 317 591 IPR036412 -
Vvi4g0034 593 CDD HAD_Pase 324 590 - -
Vvi4g0034 593 NCBIfam rRNA maturation RNase YbeY 163 281 IPR002036 GO:0004222|GO:0006364
Vvi4g0034 593 Pfam Endoribonuclease YbeY 169 279 IPR002036 GO:0004222|GO:0006364
Vvi4g0034 593 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 166 287 - -
Vvi4g0034 593 NCBIfam HAD-IIB family hydrolase 323 560 IPR006379 -
Vvi4g0034 593 Gene3D - 410 517 - -
Vvi4g0034 593 Pfam haloacid dehalogenase-like hydrolase 324 588 - -
Vvi4g0034 593 ProSitePatterns Uncharacterized protein family UPF0054 signature. 249 259 IPR020549 -
Vvi4g0034 593 Gene3D - 324 588 IPR023214 -
Vvi4g0034 593 NCBIfam Cof-type HAD-IIB family hydrolase 323 588 IPR000150 GO:0016787
Vvi4g0034 593 PANTHER ENDORIBONUCLEASE YBEY, CHLOROPLASTIC 111 593 IPR002036 GO:0004222|GO:0006364
Vvi4g0034 593 SFLD Haloacid Dehalogenase 324 592 - -
Vvi4g0034 593 Gene3D Metalloproteases ("zincins"), catalytic domain 141 282 IPR023091 GO:0004222
Vvi4g0034 593 SFLD C2.B: Phosphomannomutase and Phosphatase Like 324 592 - -
Vvi4g0034 593 ProSitePatterns Hypothetical cof family signature 2. 542 564 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0034 - - vvi:100268155 1083.94