Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0011 ATGGGAAAGACAGTGAGAGGTCAATGGCACCGTGAAATCCTTTCCTCTCCCTCCCTCTCCCTTTCTCCCATGGGTGGGTGGCAAAGGAATAAAGGTTGGTCACATTCCGTCACTTTCACAAGAATGGAGAGAAACCCATTGCAACGCCAAGTTGCCTACATGAGGAGGTCCCTCTTTGATCAGGGGTACCTTGACGAGCAGTTTGTTCAGCTAGAGGACCTTCAGGATGACGCTAACCCTAATTTTGTGGAGGAAATTGTGACGTTGTTTTATACTGATTCTGCCAGACTCATTCATAACATCGAACAGGCACTGGAGAGCAGACCTCTCGATTTCATCAGGCTAGATGATTACATGCACCAATTCAAGGGTAGTAGCTCAAGCATTGGAGCAAAAAAGGTGAAGAATGAATGCACACAGTTCAGGGAGCATTGCAGTGCAAGGAGTGCAGAAGGGTGTGTTAGGACTTTCCAACAAGTGAAGCAAGAGCATACAATCCTGAGGAGGAAACTTGAAACTTATTTCCAGTTGGCAAGACAAGCTGGACTAGCAAACTAA 558 0.4642 MGKTVRGQWHREILSSPSLSLSPMGGWQRNKGWSHSVTFTRMERNPLQRQVAYMRRSLFDQGYLDEQFVQLEDLQDDANPNFVEEIVTLFYTDSARLIHNIEQALESRPLDFIRLDDYMHQFKGSSSSIGAKKVKNECTQFREHCSARSAEGCVRTFQQVKQEHTILRRKLETYFQLARQAGLAN* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0011 185 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 79 174 IPR008207 GO:0000160
Vvi4g0011 185 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 46 180 IPR036641 GO:0000160
Vvi4g0011 185 Gene3D HPT domain 38 184 IPR036641 GO:0000160
Vvi4g0011 185 PANTHER PHOSPHORELAY INTERMEDIATE PROTEIN YPD1 48 183 IPR045871 GO:0000160|GO:0009927|GO:0043424
Vvi4g0011 185 FunFam Histidine-containing phosphotransfer protein 4 42 185 - -
Vvi4g0011 185 Pfam Hpt domain 85 165 IPR008207 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0011 Vvi-Chr4 155674 159931 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0011 K14490 - vvi:100252462 290.812