Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0010 ATGGGCCGTTCAGTTCTCTCTCACTTTCTCAATCTCTCGAACCCCTCTCCACGCTTCACATCTTCACTGTCGTCTGGCGCAATTCCAAGTAAATTATTGAAAAAATCTGGATCAATTGATCAGCATTGTCTTCTAAACAGACAAATCAGGACAGGTTTTCGATGCTGTTGCAGTATCTCGGTTTCGCAGCCTGCTGGCCAGGAGAGTTCTTCAAGCCCTCTGAGGAAGAGGATAGTGTCTGGGGTTCAGCCAACTGGGACTATACACCTAGGAAATTATCTTGGTGCTATAAAAAATTGGATCCCACTTCAGAATACATATGATACTTTCTTCTTTATTGTGGACCTCCATGCGATAACATTACCTTATGAAACACAACAATTATTTAAAGCAACGAGGGATACAGCAGCGATTTATTTGGCATGTGGTGTGGACACCTCCAAGGCCTCTGTCTTTGTTCAGTCTCATGTTCGTGCCCATTCAGAATTGATGTGGTTACTGAGTTCTGCTACTCCAATTGGTTGGTTGAACAAAATGATTCAGTTCAAAGAGAAATCCCGGAAAGTGGGAGATGAAAATGTTGGGGTTGCCCTTCTGACTTATCCTGTTCTCATGGCTTCTGATATTCTTTTATATCAGTCTGATTTTGTCCCAGTTGGGGAGGATCAGAAGCAGCATCTGGAACTGACCCGTGAGCTGGCTGAACGTGTTAATTATTTATATGGAGGAAGGAAGTGGAAGAAATTGGGAGGGCGAGGAGGTGCAATTTTTAAGGTTCCTGAGCCCCTTATTCCACCAGAAGGAGCACGTGTAATGTCCCTTACAGATGGTTGTTCCAAGATGTCCAAGTCTGCTTCTTCAGATCAGTCTCGTATCAACCTTCTTGACCCAAAAGATGTAATTGCAAACAAGATCAAACGTTGTAAAACTGACTCATTTCCTGGCCTGGAATTTGACAATCCTGAGCGACCTGAATGCAACAACCTTCTTACAATTTATCAGCTAATGTCAGGCAGGACAAAAGAGGAAGTTGCGCAGGAATGCCAAGGTATGAACTGGGGTGTGTTCAAGAGAATCCTAACGGATGCATTGATTGATCATCTACATCCCATCCAGGTTCGCTACGAGGAAATTATGTCTGATTCAGCTTATTTGGATAGGCTCTTGGCAGAGGGTGCCACAAAAGCTGCAGATATAGCTGATGCTACTCTCAATAATGTCTATCAGGCGATGGGATTCTTGCGAAGATGA 1251 0.4373 MGRSVLSHFLNLSNPSPRFTSSLSSGAIPSKLLKKSGSIDQHCLLNRQIRTGFRCCCSISVSQPAGQESSSSPLRKRIVSGVQPTGTIHLGNYLGAIKNWIPLQNTYDTFFFIVDLHAITLPYETQQLFKATRDTAAIYLACGVDTSKASVFVQSHVRAHSELMWLLSSATPIGWLNKMIQFKEKSRKVGDENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPEGARVMSLTDGCSKMSKSASSDQSRINLLDPKDVIANKIKRCKTDSFPGLEFDNPERPECNNLLTIYQLMSGRTKEEVAQECQGMNWGVFKRILTDALIDHLHPIQVRYEEIMSDSAYLDRLLAEGATKAADIADATLNNVYQAMGFLRR* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0010 416 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 84 93 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi4g0010 416 SUPERFAMILY Nucleotidylyl transferase 76 413 - -
Vvi4g0010 416 Gene3D - 273 383 - -
Vvi4g0010 416 CDD TrpRS_core 77 365 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vvi4g0010 416 Hamap Tryptophan--tRNA ligase [trpS]. 75 414 IPR024109 GO:0004830
Vvi4g0010 416 Gene3D HUPs 78 412 IPR014729 -
Vvi4g0010 416 NCBIfam tryptophan--tRNA ligase 75 413 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vvi4g0010 416 PRINTS Tryptophanyl-tRNA synthetase signature 138 157 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vvi4g0010 416 PRINTS Tryptophanyl-tRNA synthetase signature 215 236 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vvi4g0010 416 PRINTS Tryptophanyl-tRNA synthetase signature 88 104 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vvi4g0010 416 PRINTS Tryptophanyl-tRNA synthetase signature 280 290 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vvi4g0010 416 Pfam tRNA synthetases class I (W and Y) 77 368 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi4g0010 416 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 49 414 - -
Vvi4g0010 416 FunFam Tryptophan--tRNA ligase 271 381 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0010 K01867 - vvi:100262715 808.52