Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0009 ATGGATCGCGATAGTTTACTGGAAAGAGAGAGATATCAGATCCAGCAGATTCGAGAGCTGGAATTTGAGGAATTACAGATCGAGGAAGTCGATGACCTTAACGAATCAGACGACGATGCTGCCACTGATCATGGCTATAGAGGTGCTGCCTCATCCAGTGAATTTACCTTCGACACCTGTTTGGCTTCCTTGCATACATACCTTGGTGAGGTTGAAGACACTCACCATAGGCTAGCTTTCTTAGATGGAGGAGCTGTCTGGGCCTTACCATTGTTCTATCTTGAAGGAGCTGTTCTATTCCCAGAGGCCACCCTTCCTCTGAGAGTTATTAAGTCCAATTTTGTAGCTGCTGTTGAAAAAGCATTGCACCAAGCTGATGCTCCTTATACTATAGGTGTTGTCCATGTCGAAAGGGATCCTGATAGTGGGAGGATAAGGTTCTCAACCATTGGGACAACTGCAGAGATTCGGCAATACCGACGGTTGGAGGATCATTCATTAAATGTGGTTACTCGAGGCCAACAGAGATTCCATTTGAGACGTGGTTGGATTGATGATGATGGAGTGCCATATGGAGAGGTTCAAATTATCCAGGAAGATTTGCCATTAAGAACTCCACGGGATGCATTTGGAAAATTGGCACCATTAAGTAACTTACGAAGCTTTAGTCACCCCCATACATCACAGTCAAATACTTCTCATGCTAAACGGCCTAGATATGGGGATAAAGACAGTGCTTCGGAGTCAAATTCAGAGGAAAGCTTTGATAGTGAGCTCTCTCTGGCAGAAATGAGAATGCATCGATCTGCAATTGATTCTTGTTATGGATATGATACAATTGATGAATCAACAAGCAGTGATGATGACAAGTTTGTGTGTGAGTCAGAACTCCAGTTGGGAAGATCTCATCTAAATGAACCAATAGGGTCAATGCATCTAGACTGTGAGAGAAGGAACAAAAAAGCCAACTTGGGAATTAGGAACAAATCCATTTCAGGAAGTCAATCCTGCAAAGGGAAGGGTCTGAAAGAGGGACAGATGGTTACCAAGTTAAACCAGTCATATGGAGTTCCTAGAGCATTCTGGCCCTATTGGGTTTATCGAATGTATGATTCCTACCATCTTGCTCAAAGGGCTGCAGGTATGTGGAAACAGATAGTTGGTGCACCAAGCATGGATGAACTTGTGAAGAAGCCTGATCTATTGTCATTTCACATAGGCAGCAAAATTCCTTTGTCTGAATCTATTAGACAGGAGCTTCTTGAGATTGATGGTACCTCATATAGATTACGTCGAGAAATTGAGTTACTTGAAAGTTTTGATCGAATTCGATGTAAGAATTGTCAGACTGTAATTGCAAAGCGAAGTGATATGTTGATGATGTCTAGTGAAGGTCCTCTTGGTGCTTATGTGAACCCAGGTGGTTATGTACATGAAATAATGACTCTTTACAAGGCAAATGGCTTAGCACTAACTGGGCGTCCAATTAAAGAATACAGCTGGTTTCCCGGGTATGCATGGACAATTTCAAACTGTGCCACTTGCGAAACCCAAATGGGTTGGCTCTTCACAGCCACAAACAAGAAATTGAAGCCTTCCCTGTTTTGGGGCATTCGGAGTTCCCAAGTTGCTGATGACATGCGCTGA 1647 0.4317 MDRDSLLERERYQIQQIRELEFEELQIEEVDDLNESDDDAATDHGYRGAASSSEFTFDTCLASLHTYLGEVEDTHHRLAFLDGGAVWALPLFYLEGAVLFPEATLPLRVIKSNFVAAVEKALHQADAPYTIGVVHVERDPDSGRIRFSTIGTTAEIRQYRRLEDHSLNVVTRGQQRFHLRRGWIDDDGVPYGEVQIIQEDLPLRTPRDAFGKLAPLSNLRSFSHPHTSQSNTSHAKRPRYGDKDSASESNSEESFDSELSLAEMRMHRSAIDSCYGYDTIDESTSSDDDKFVCESELQLGRSHLNEPIGSMHLDCERRNKKANLGIRNKSISGSQSCKGKGLKEGQMVTKLNQSYGVPRAFWPYWVYRMYDSYHLAQRAAGMWKQIVGAPSMDELVKKPDLLSFHIGSKIPLSESIRQELLEIDGTSYRLRREIELLESFDRIRCKNCQTVIAKRSDMLMMSSEGPLGAYVNPGGYVHEIMTLYKANGLALTGRPIKEYSWFPGYAWTISNCATCETQMGWLFTATNKKLKPSLFWGIRSSQVADDMR* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0009 548 MobiDBLite consensus disorder prediction 220 235 - -
Vvi4g0009 548 FunFam Lon protease homolog 371 435 - -
Vvi4g0009 548 Pfam ATP-dependent protease La (LON) substrate-binding domain 89 438 IPR003111 -
Vvi4g0009 548 Gene3D - 69 197 IPR046336 -
Vvi4g0009 548 Gene3D - 371 435 - -
Vvi4g0009 548 ProSiteProfiles Lon N-terminal domain profile. 89 439 IPR003111 -
Vvi4g0009 548 PANTHER CEREBLON 40 540 - -
Vvi4g0009 548 FunFam Blast:Protein cereblon homolog 436 548 - -
Vvi4g0009 548 MobiDBLite consensus disorder prediction 220 258 - -
Vvi4g0009 548 CDD CRBN_C_like 443 543 IPR034750 -
Vvi4g0009 548 FunFam ATP-dependent protease La domain-containing protein 69 197 - -
Vvi4g0009 548 MobiDBLite consensus disorder prediction 236 250 - -
Vvi4g0009 548 SMART lon_5 88 439 IPR003111 -
Vvi4g0009 548 SUPERFAMILY PUA domain-like 88 438 IPR015947 -
Vvi4g0009 548 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 443 534 IPR004910 -
Vvi4g0009 548 ProSiteProfiles CULT domain profile. 440 547 IPR034750 -
Vvi4g0009 548 Gene3D Peptide methionine sulfoxide reductase. 436 548 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0009 K11793 - vvi:100268165 1075.85