Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0008 ATGATTTTATTGCACAGACCCAACAGTCAGCTGCTCTCATTGGCAGGGAAAAGCCTTGCTCTGTTGGTGAGTGGAGGAGGAGAAAGAAAAGTCAGGGTTGCAATGGCGAGTAATGGTGTTTCAGGGCTTGATATGGAGAAGAAATCCGGTGGTGGTGGAGGTGTTGAAGACATTTACGGTGAGGATAGTGCCACGGAGGACCAGCTTGTCACTCCCTGGACTGTTTCTGTTGCTAGCGGTTATACCCTGTTGCGGGATCCACACCACAACAAAGGGCTTGCCTTCACTGAGAACGAGAGAGATGCCCATTACTTGCGTGGACTTTTGCCCCCAGCAGTCCTGAATCAGGATCTTCAGGAGAAGAGATTGATGCACAATCTTCGCCAATATAAAGTTCCGTTGCAAAGGTACATGGCTATGATGGATCTTCAGGAGAGGAATGAAAGGTTGTTTTACAAGCTTCTTATTGATAATGTTGAGGAACTGCTCCCAGTTGTCTACACTCCAACAGTTGGTGAGGCTTGCCAGAAATACGGGAGCATTTTCAGGCGTCCTCAGGGTCTTTACATCAGTTTGAAAGAGAAGGGAAAGATACTGGAAGTGCTGAAAAACTGGCCTGAGAGGAGTATTCAAGTTATTGTCGTAACTGATGGTGAGCGTATTTTGGGGCTTGGGGATCTTGGCTGCCAGGGAATGGGAATACCTGTGGGAAAACTTTCTTTATATACAGCACTAGGTGGACTACGTCCTTCAGCATGCTTGCCTGTAACGATAGATGTTGGCACAAACAATGAGCAGCTGTTGAAGGATGAGTTCTACATTGGACTCAAGCAAAGGAGGGCAACTGGGCAGGAATATGCCGAGCTTCTACATGAGTTCATGTGTGCAGTTAAACAGAACTATGGGGAGAGGGTCCTTATACAGTTCGAAGATTTTGCAAACCACAATGCATTTGAGCTGCTCGCAAAATATAGCAAAACTCATCTTGTTTTCAACGATGATATTCAGGGTACAGCATCTGTGGTCCTAGCAGGGCTAATTGCTTCTCTGAAACTAGTAGGCGGGAGCTTAGCTGAGCATACTTTCCTGTTTCTCGGTGCTGGAGAGGCTGGAACTGGCATAGCAGAGCTCATAGCTCTTGAGATATCAAAACAGACAAAAGCTCCATTGGAAGAGACCCGTAAGAAGATTTGGCTTGTCGACTCAAAGGGACTGATTGTTCACTCTCGCATGGAATCACTTCAACACTTCAAGAAGCCTTGGGCTCATGATCATGAACCTATTAGGGCACTCTTAGATGCAGTCAAGTCTATCAAGCCGACAGTGTTGATAGGATCATCTGGAGTAGGGAAAACATTTACCAAGGAGGTGGTTGAGGCCATGACATCCTTCAACAAGAAACCTCTGATTCTTGCACTTTCCAACCCAACCTCACAATCTGAGTGTACTGCTGAAGAAGCTTATACATGGAGCAAGGGTCGTGCAATTTTTGCTAGTGGAAGCCCATTCGACCCAGTTGAATACAATGGCAAACTTTTTGTGCCTGGCCAGGTCCTAATTTGTCTAGAGCACTTCTTATTGTAA 1584 0.4609 MILLHRPNSQLLSLAGKSLALLVSGGGERKVRVAMASNGVSGLDMEKKSGGGGGVEDIYGEDSATEDQLVTPWTVSVASGYTLLRDPHHNKGLAFTENERDAHYLRGLLPPAVLNQDLQEKRLMHNLRQYKVPLQRYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGLRPSACLPVTIDVGTNNEQLLKDEFYIGLKQRRATGQEYAELLHEFMCAVKQNYGERVLIQFEDFANHNAFELLAKYSKTHLVFNDDIQGTASVVLAGLIASLKLVGGSLAEHTFLFLGAGEAGTGIAELIALEISKQTKAPLEETRKKIWLVDSKGLIVHSRMESLQHFKKPWAHDHEPIRALLDAVKSIKPTVLIGSSGVGKTFTKEVVEAMTSFNKKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPVEYNGKLFVPGQVLICLEHFLL* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0008 527 PIRSF ME 46 522 IPR001891 GO:0004470|GO:0004471
Vvi4g0008 527 Gene3D - 333 521 - -
Vvi4g0008 527 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 335 518 IPR036291 -
Vvi4g0008 527 ProSitePatterns Malic enzymes signature. 331 347 IPR015884 GO:0004471
Vvi4g0008 527 Pfam Malic enzyme, NAD binding domain 335 517 IPR012302 GO:0051287
Vvi4g0008 527 SMART malic_2 144 325 IPR012301 GO:0004471
Vvi4g0008 527 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 63 334 IPR046346 -
Vvi4g0008 527 SMART Malic_M_2 335 524 IPR012302 GO:0051287
Vvi4g0008 527 Gene3D - 78 332 IPR037062 GO:0004471
Vvi4g0008 527 FunFam Malic enzyme 337 473 - -
Vvi4g0008 527 FunFam Malic enzyme 78 332 - -
Vvi4g0008 527 PRINTS Malic enzyme signature 246 268 IPR001891 GO:0004470|GO:0004471
Vvi4g0008 527 PRINTS Malic enzyme signature 465 481 IPR001891 GO:0004470|GO:0004471
Vvi4g0008 527 PRINTS Malic enzyme signature 362 378 IPR001891 GO:0004470|GO:0004471
Vvi4g0008 527 PRINTS Malic enzyme signature 210 239 IPR001891 GO:0004470|GO:0004471
Vvi4g0008 527 PRINTS Malic enzyme signature 150 174 IPR001891 GO:0004470|GO:0004471
Vvi4g0008 527 PRINTS Malic enzyme signature 331 347 IPR001891 GO:0004470|GO:0004471
Vvi4g0008 527 PRINTS Malic enzyme signature 306 324 IPR001891 GO:0004470|GO:0004471
Vvi4g0008 527 Pfam Malic enzyme, N-terminal domain 144 324 IPR012301 GO:0004471
Vvi4g0008 527 PANTHER MALIC ENZYME-RELATED 53 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0008 Vvi-Chr4 105491 110311 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0008 K00029 - vvi:100249166 959.518