Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi4g0001 | ATGGAGAAGGAGCAAAATTCAGAGACGAAGTGGGAAGCGAAGGTCTCAACAGTGTTAAAGGAAGCCACAGCAGATCAAATTTGGGCCCTTTACAGAGACTTTTTTAACTTCCATAAATGGTTTCCGGGTCTCGCCAGCTGTTACGGCATCCACGGCATCAACGGTGAGCCCGGCTGCATCCGATACTGCGGCGGCTTCTCCATCAAATCGGAGGAGGGCGAAAACTCCGTCAGCTGGTCCAAGGAGAAACTGACTGCCGTTGATCCAATTGAGCGGAGTTTGACCTACGAGATCGTGGATTGCAACATCGGTTTCAAGTCGTATGTGTCGACGGTCAAGATCACCCCATGTGGCAGTGACAGTGAAAGTGGCTGCGAGATTGATTGGTGGATCAACGTCGATCCGGTGAAAGGGTGGGTGATGGAAGATTTGGTGAAGAAGTTTGAGGTGGGGCTGGCACGTGTGGCTAGAAGAATGGAAGAGGCTTTGACAAATCTAGAAGAATGA | 507 | 0.5049 | MEKEQNSETKWEAKVSTVLKEATADQIWALYRDFFNFHKWFPGLASCYGIHGINGEPGCIRYCGGFSIKSEEGENSVSWSKEKLTAVDPIERSLTYEIVDCNIGFKSYVSTVKITPCGSDSESGCEIDWWINVDPVKGWVMEDLVKKFEVGLARVARRMEEALTNLEE* | 169 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi4g0001 | 168 | FunFam | Lachrymatory-factor synthase | 4 | 164 | - | - | |
| Vvi4g0001 | 168 | Pfam | Polyketide cyclase / dehydrase and lipid transport | 12 | 160 | IPR019587 | - | |
| Vvi4g0001 | 168 | Coils | Coil | 156 | 168 | - | - | |
| Vvi4g0001 | 168 | PANTHER | LACHRYMATORY-FACTOR SYNTHASE | 1 | 164 | - | - | |
| Vvi4g0001 | 168 | Gene3D | - | 2 | 168 | IPR023393 | - | |
| Vvi4g0001 | 168 | SUPERFAMILY | Bet v1-like | 21 | 163 | - | - | |
| Vvi4g0001 | 168 | CDD | PYR_PYL_RCAR_like | 11 | 160 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi4g0001 | Vvi-Chr4 | 11788 | 12294 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi4g0001 | - | - | vvi:100242274 | 355.525 |