Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1319 ATGGAAAGGAGTCGGTCTTTGGTAGGGATGGAGGTCCCTATCACCGGCAGCGACTCGGTTAAGTGGATAGAGGTTACTGTTCCTTCTGCAACTCCTGCTACTTCCTCTTCTTCTTCTTCATCGTCGCCCTTTGCCCCTTTGACTGAGGATGCTGCCGCCTGCGCCATCATTGGGGATCCTCCTACCTATCTAATTTGGAGAATTCACAAAAGTCAACCATGCGCTCTTGATTTAGTGGAACTCTGCGCTCATAAAGAATTTCCAAGGACTGGAATTCGAATTCTATTCCCTGATGCACTCTGTCCATTTGCCTTTATATGCAAGGATGAGATTAGATGCACTTCTGGCAACCTGTACCTGCTTTATGCATTGACTGTTTCAGGAGTAGCATATCTATTCAAACTCAGAAATATTTACACTTATGAATCCTGCTCTATTTTCCCATCAAATGATCTTATAGAGTTTAATCTGCAAACTCATCCACATTATGGAGAAATAACAGCTGTAGCAGCAACATCAGGGTCTCTTGTAATCGGGAGAAGTGATGGATCTGTTAGTCTTTTCCAACTTGGAATGTTTGATCAAAGTGCTCCAGATTTTGTACATGAGCTGCGGGATGATGCAGGAATTGGTCGTTTGTGGGGTTTCATCTCAAGGGGTAGGATGGTGTCGCCTGTTCAGGATTTAGTAATATCAGAGGTGGCTGGTAGAAAACTTGTTTTTGTGCTTCATTTTGATGGGATGTTACGAGTATGGGATCTTTTAAGCCATAGCAAGATTTTCAGTTGTACCATGAGCTCTACACCATTGCCAGGAGCTACATTTTTAAGGTTATGGGTGGGTGAAGCTAACTATGATACAAGTGTAATTCCTTTGGTGATCTTATGTAGACATGCTTTGGAAGTCGACATGGAGATGATCTCCATATATCACCTCCGTTTTAGTGTGGGAGACAGGATCATTTTCTTTTTGGAGCCCTCAATGCAAAATATCCCTTCTGAGGAGGGGAAATTCATTGATGTGAAACTTACTTCAAATAAGATATGGATGCTAAAACAAGACGGGTTGATATCACACAACCTGTTTCATACAAAAACTAATCTGGAAGAAGGACACTGTTATGCTTTGCAGGAAACTTTTGTTGCTGACCAGCTATTTCAAAGTTCTGAACATTGTTTGGATGATCTTCTTTGGATCACCCATTCACTATTTTCCACTATGAAGGAGCAAATTGTTTCATTTGTGTCTTCTATTTTCTTACGGAGGCTGCTTCATCCTGGGGTTTATCATAACAGTGTTCTACGTACAACTTTACAAGATTATAACAAACACTGGACTAATTCTGAGTTCCAGTCCTTGACTGTTGATGGACTGAAAAAGGAGATCCTTTCGCTGATTGAACATGAGGGTGTCCCTGAAAGTCCAAGTACATTAATTTATTGCTGGAAAAATTTTTGTATGCGCTATTTCCATTACTGGTGCAAGAACAGTGCACCATATGGTTTGCTTGTTGACTCCTCAACTGGTGCTGTTGGTCTAATCAGAAAAGATTCATTATCCTTGTTCCGCTGTTTGGAGGATATTGAGCTGCTTATCTATGGTTCTTTTGATGAACTTGGTGATTTTGTGGACTCTGGGTTTGATCTGTATGGTGATGATCTAGAACGCGAAATTCTTTTTGAAGTGCTCCGATGCATTAGTAGTATCAGCCAACAACTGGGCAAAACTGCTTCAGCACTGTTTTATGAATCTCTTATTAGTGCACCAGTCATTTCATCTGAAGAAATTGTTCCTCGATTACTAAAGATCTTAGAGACTGGATGTAGTTCCTCGGTAGCAGCACTCCCTATATCAGATCTTGGAGCAGATGGTGCTTGGGAGAAGGAACTGGCTAATCACAAAATGTTGAGGAAATTTTCTGTTGACATGCTTTTGTCTCTTCATGCTTTGTGCAACAAAGCTAGCTCATGGAGCAGGGTTTTGGATGTCATAGAAAGCTATTTAAAATTTCTTGTACCTCAAAAAATGACACAGGGAGTGGATTCTGAAGTATTATTTAATATCAATACTTCCATTTTGGTCCAAGCTACTTCTCAAGTTGCAAAAGTGATGTTTGAATCTGCTTTGGACATTCTTCTCTTACTAAGCTATCTGGTGAACATAAGTGGGCAGATCCATATGTTGCATGATGATATATCCAGAATACAGCTTGAGTTGGTTCCAATGATTCAAGAAATTGTTACTGAGTGGCTTATCATTCATTTCTTTAGCACCACACCTTCTGAGTCACCTGCTCTTGAAGATTTCAGTTCTCAACTTTCATCATTACAAATTGATAGCAACATTGATAGAAAATCATGGAACGAGAGGCTTGGAAAGTGTGACTTCACATTGGCTTTTATGCTATTACTAAATATTCGAAGTTCCTCTGGAGATCTAAGCCACCTCTCTTTAAGATCCCTTCCTAGTCCCCGCAGCTTTATTTCTTCAGTACGGGACTTTACTAGCTGGATGATTTGGGGCAGTACTGGAGAAGAATCATCTGCTTTCTTTAGCCATTCAACTGAGCTTGCATCAATCCTACTTAAGCATGGCCAATATGATGCAGTTGAGTACCTACTTACTATCGTGGATGCCCATTCACACAAGGAAAAGTTATCTGGAAGTATCCAAAGTAGTGATGGTGGATGGTGCACACTCCATCATCTTCTAGGATGTTGTCTTCTTGCTCAGGCACAAGGTGGCTTAAATGGAATACAGAAAGAAAAGAAGATTTGTGAAGCTGTTCGCTGCTTCTTCAGGTATTTAGTATTCTGTAAATTAGTTTATAATTTCATTTTTCCCACCAGGAAGCTTTTTCTCTAG 2865 0.4035 MERSRSLVGMEVPITGSDSVKWIEVTVPSATPATSSSSSSSSPFAPLTEDAAACAIIGDPPTYLIWRIHKSQPCALDLVELCAHKEFPRTGIRILFPDALCPFAFICKDEIRCTSGNLYLLYALTVSGVAYLFKLRNIYTYESCSIFPSNDLIEFNLQTHPHYGEITAVAATSGSLVIGRSDGSVSLFQLGMFDQSAPDFVHELRDDAGIGRLWGFISRGRMVSPVQDLVISEVAGRKLVFVLHFDGMLRVWDLLSHSKIFSCTMSSTPLPGATFLRLWVGEANYDTSVIPLVILCRHALEVDMEMISIYHLRFSVGDRIIFFLEPSMQNIPSEEGKFIDVKLTSNKIWMLKQDGLISHNLFHTKTNLEEGHCYALQETFVADQLFQSSEHCLDDLLWITHSLFSTMKEQIVSFVSSIFLRRLLHPGVYHNSVLRTTLQDYNKHWTNSEFQSLTVDGLKKEILSLIEHEGVPESPSTLIYCWKNFCMRYFHYWCKNSAPYGLLVDSSTGAVGLIRKDSLSLFRCLEDIELLIYGSFDELGDFVDSGFDLYGDDLEREILFEVLRCISSISQQLGKTASALFYESLISAPVISSEEIVPRLLKILETGCSSSVAALPISDLGADGAWEKELANHKMLRKFSVDMLLSLHALCNKASSWSRVLDVIESYLKFLVPQKMTQGVDSEVLFNINTSILVQATSQVAKVMFESALDILLLLSYLVNISGQIHMLHDDISRIQLELVPMIQEIVTEWLIIHFFSTTPSESPALEDFSSQLSSLQIDSNIDRKSWNERLGKCDFTLAFMLLLNIRSSSGDLSHLSLRSLPSPRSFISSVRDFTSWMIWGSTGEESSAFFSHSTELASILLKHGQYDAVEYLLTIVDAHSHKEKLSGSIQSSDGGWCTLHHLLGCCLLAQAQGGLNGIQKEKKICEAVRCFFRYLVFCKLVYNFIFPTRKLFL* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1319 954 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP160 1 935 IPR021717 -
Vvi3g1319 954 Pfam Nucleoporin Nup120/160 64 530 - -
Vvi3g1319 954 SUPERFAMILY WD40 repeat-like 115 265 IPR036322 GO:0005515
Vvi3g1319 954 Pfam Family of unknown function (DUF5311) 547 739 IPR035192 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1319 - K14303 vvi:100250223 1803.88