Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1316 ATGGAGGTGGTAGTGGGGGAGCCCACCAGAGTTCAAACCCTAGCCGAAAAGAATCCAACACAGGTGCCACCTGAATACATACAGGCGCCAGAGAATCGACCCCAAATCAAAATCCCCACAACTGAGGATAATACTTCTTCCACAGTTCCTGTCATCGATCTCTTCGGATTCGACCCGGATCACTGGGGCGACGTTCGTCGTGAACTGGGGCAAGCTTGCAAAGAGTGGGGTGCGTTTCAAGTGACCAATCATGGAGTTCCATTCCACTTGCTACACCGCATGAGGAGCGTAGGCCTTTCCTTTTTCAAAGACAGCCCCATGTCGCACAAACTCAGTTACGCCTGCCCTCCGGGTTCTGCTGCGTCCGAAGGCTATGGCAGCCGAATGCTGGTCAGTACTTCAAACGACACCGTTTTGGATTGGAGGGATTTCTTTGATCATCACACCTTGCCTCTTTCTCGTCGCAACCCCTCTCGCTGGCCAGATTTTCCTCCTAATTACAGAGAAGTTGTGGTCGAGTACAGCGATTGTATGAAAGCTCTTGCTCAAAAGCTTCTGGCATTCATGTCGGAGAGTCTAGGCTTGCCATCTTCATGTATCGAAGATGCTGTAGGCGATTTTTATCAGAATATAACAGTTAGTTATTACCCACCCTGCCCTCAGCCGGAACTCACCCTTGGTTTGCAATCCCATTCTGACATGGGTGCCATCACACTCCTGATCCAAGATGATGTTGGTGGTCTCCAGGTCTTGAAAGATGGTGAATGGGTGATGGTACAGCCTCTATCAGATGCCATAGTTGTCATTTTGGCTGACCAAACTGAGATTATAACCAATGGTAATTATAGGAGTGCTCAACATCGGGCTATAGCTAATGCCAACAAAGCGCGACTTTCAGTAGCCACATTTCATGACCCTGCCAAGACAATGAAAATATCTCCAGCTTCTGCGCTTGTGACTGAGTCCTTCCCTCCCCGATACTGTCAAATAGTCTATGGAGAATATGTTTCATCATGGTACACAAAGGGCCCGGAAGGGAAACGAAATATTGACGCACTCATGCTTTAG 1068 0.486 MEVVVGEPTRVQTLAEKNPTQVPPEYIQAPENRPQIKIPTTEDNTSSTVPVIDLFGFDPDHWGDVRRELGQACKEWGAFQVTNHGVPFHLLHRMRSVGLSFFKDSPMSHKLSYACPPGSAASEGYGSRMLVSTSNDTVLDWRDFFDHHTLPLSRRNPSRWPDFPPNYREVVVEYSDCMKALAQKLLAFMSESLGLPSSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSDMGAITLLIQDDVGGLQVLKDGEWVMVQPLSDAIVVILADQTEIITNGNYRSAQHRAIANANKARLSVATFHDPAKTMKISPASALVTESFPPRYCQIVYGEYVSSWYTKGPEGKRNIDALML* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1316 355 Pfam 2OG-Fe(II) oxygenase superfamily 213 306 IPR044861 -
Vvi3g1316 355 SUPERFAMILY Clavaminate synthase-like 9 344 - -
Vvi3g1316 355 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 206 306 IPR005123 -
Vvi3g1316 355 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 45 325 - -
Vvi3g1316 355 Pfam non-haem dioxygenase in morphine synthesis N-terminal 49 162 IPR026992 -
Vvi3g1316 355 FunFam 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 7 343 - -
Vvi3g1316 355 Gene3D - 7 343 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1316 Vvi-Chr3 19173710 19192428 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1316 11 350 Glycosyltransferase AT5G59530 31.214 9.01e-51 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1316 - - vvi:100248395 733.021