Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi3g1310 | ATGGCAAGTTGTGGATTTGGGGCAAAGGCGATGGTGGACGCTTGGGCTTTGGTCAGGAGTACCCTGCTTTTCTGCCTACGCTTAATCCCAATTTGGATTCAATTCGTTCTACTGCTCTTGGTGGCGTTCATTCGGTGGCTCTCAGCTCGCTTGGCCAAGTTTTCACATGTTTGCAGGGGCTATGGTGGATTTGGCGCTCTTGGGCATTCTGTTTATCATAGGGAACTTCTCCCTAGAATGGTGGAAGGCTCTTGGAATGCCAAAATACGGCATATTGCAACTGCTGGGACACATACTGCTGCTATCACTGAATCAGGTGAACTTTATACTTGGGGTCGAGATCAAGGGGATGGTAGACTGGGCCTTGGTCCTAACTGTGGTCCAAATGAGGGAGGTGGACTTAGTATCCCTTCCAAAGTGAAAGCATTACCTGTGCCTGTAGCTGCTGTTTCCTGTGGTGGTTTTTTCACAATGGTGCTGACTCAGGAGGGCCAACTTTGGAACTGGGGAGCAAACTCCAACTATGAGCTTGGAAGAGGTGATAAGGTTGGAGGTTGGAAACCACAACCAATTCCTAGCCTGCAGGATGTTCGTATCATCCAGATAGCTAGTGGTGGATATCACTCTCTTGCATTAACAGATGATGGCAAAGTACTTTCATGGGGTTATGGTCAACATGGTCAGCTGGGTCATTCCTCCATCGAAAATCAGAAAATACCTACAGTGATTGAGGCTTTAGCTGATGAGCATGTCATCTATATTGCTTGTGGAGGTTCATCTTCAGCAGCTATAACAGATAACGGGAAGCTGTACATGTGGGGAAATGCCAAGGACTCTCAATTAGGCGTTCCTGGGCTGCCAGAGACACAACCATTGCCTGTTGAAGTAAAGTTTCTTATGGAGGATGATAGATTGGGACCACACAATGTGCTATCTGTTGCAGTTGGTGCATCTCATGCCATGTGCTTGGTTTCAAGGTCAGGTTGTTAA | 990 | 0.4727 | MASCGFGAKAMVDAWALVRSTLLFCLRLIPIWIQFVLLLLVAFIRWLSARLAKFSHVCRGYGGFGALGHSVYHRELLPRMVEGSWNAKIRHIATAGTHTAAITESGELYTWGRDQGDGRLGLGPNCGPNEGGGLSIPSKVKALPVPVAAVSCGGFFTMVLTQEGQLWNWGANSNYELGRGDKVGGWKPQPIPSLQDVRIIQIASGGYHSLALTDDGKVLSWGYGQHGQLGHSSIENQKIPTVIEALADEHVIYIACGGSSSAAITDNGKLYMWGNAKDSQLGVPGLPETQPLPVEVKFLMEDDRLGPHNVLSVAVGASHAMCLVSRSGC* | 330 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi3g1310 | 329 | Gene3D | - | 49 | 183 | IPR009091 | - | |
| Vvi3g1310 | 329 | Gene3D | - | 184 | 328 | IPR009091 | - | |
| Vvi3g1310 | 329 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 216 | 267 | IPR000408 | - | |
| Vvi3g1310 | 329 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 268 | 326 | IPR000408 | - | |
| Vvi3g1310 | 329 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 164 | 215 | IPR000408 | - | |
| Vvi3g1310 | 329 | SUPERFAMILY | RCC1/BLIP-II | 58 | 325 | IPR009091 | - | |
| Vvi3g1310 | 329 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 215 | 264 | IPR000408 | - | |
| Vvi3g1310 | 329 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 163 | 212 | IPR000408 | - | |
| Vvi3g1310 | 329 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 267 | 323 | IPR000408 | - | |
| Vvi3g1310 | 329 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 105 | 160 | IPR000408 | - | |
| Vvi3g1310 | 329 | PRINTS | Chromosome condensation regulator RCC1 signature | 92 | 108 | IPR000408 | - | |
| Vvi3g1310 | 329 | PRINTS | Chromosome condensation regulator RCC1 signature | 263 | 284 | IPR000408 | - | |
| Vvi3g1310 | 329 | PRINTS | Chromosome condensation regulator RCC1 signature | 205 | 223 | IPR000408 | - | |
| Vvi3g1310 | 329 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 106 | 163 | IPR000408 | - | |
| Vvi3g1310 | 329 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 60 | 123 | - | - | |
| Vvi3g1310 | 329 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 202 | 212 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi3g1310 | Vvi-Chr3 | 19077182 | 19089102 | Dispersed/Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi3g1310 | - | - | vvi:100260362 | 535.798 |