Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1308 ATGGCTCCCTCTCCCTCTTTCTTTCTCATTTTCTCCATATTTTTTGTTTTATTCCATGCTGCTCCTTCATTCCAACTACAGCTCAACACCCTGGATATCGCTGCATTGCTCGCAATCAAGAACACTCTCACCGACGTTCCCGGCACTCACTTCTTCTCCACATGGGATTTCGCCTCTCCCCGCCCCTGCTCCGCCTTCGCCGGTGTCATCTGCTCTCTCGACGACTCCTCTCCAAATCCCACCCTCCGGGTCACCTCTCTTATACTTGGCACCGGCCTCTCCGACTCCCCCGGACTCGCCGGCTCGCTCTCCGCGTCCCTCTCCAACCTCACCCAACTCACTCAGCTCGTCCTCTACGCCGGCCTCGTCACCGGCCCCATCCCTCCCCAGCTCGGAAACCTCATCAACCTCCGAGTCCTCTCCCTCACCAACAACCGTCTCACCGGTCCAATCCCCGCCTCCTTGTCATCCCTGCATAATTTGCATACTCTGGATCTGAGTTTCAACCAACTCAGCGGCTCTATCCCTCCCGGCATTGCTCATCTGGATCAGCTGAAGGTGCTCATATTGGCCTCCAACATGTTGTCCGGTGAGTTGCCCAAGTTCCCGGCGAGTCAGGAACTGTTCCACATTGATGTGAAGAGAAACAAGATATGGGGGCGGCTGCCGTCGTCAATGCCGGTGTCGGTCCGTTACTTGTCGGTTTCCGAGAACAGGATGTGGGGCCCCATCAACGGCTTGGAATCACTCTCTGAGTTAGTGTACCTCGACTTAAGCATGAACCAATTTAGTGGGCCCATCCCCAAGTCACTGTTCCATTCAAGGCTTAATTCAATGCTGTTGCAACGGAACAATTTCTCCGGTGGGGTCCCCACTGATGCCTCCTCCACATCCTACGCCCAGGGCTCCATCGTCGATCTCAGCCATAATCTCCTCACGGGAGAACTCTCTCCAATTCTGGCAGGCGTCGAGACCCTCTTCCTGAACAACAACCGTCTGATTGGAAGAGTCCCAGACGAGTATGTCAACAGCATTTCCAGAGGTGACACCAAGACACTGTATTTACAGCACAATTACATTTCGGATTTTCCGATGCAATCGGGACTGGCCTTGCCGGACTCAGTGTCCTTGTGCCTCTCCTATAACTGCATGGTCCCTCCGGTAGGGCTTGCGGCTTGTCCGGCCAGCGCGGGCGGGCAGCTCTCACGGCCGGCGTACGAGTGCTCAGTGTACAACAATGGCACGGCCCCATAG 1254 0.5558 MAPSPSFFLIFSIFFVLFHAAPSFQLQLNTLDIAALLAIKNTLTDVPGTHFFSTWDFASPRPCSAFAGVICSLDDSSPNPTLRVTSLILGTGLSDSPGLAGSLSASLSNLTQLTQLVLYAGLVTGPIPPQLGNLINLRVLSLTNNRLTGPIPASLSSLHNLHTLDLSFNQLSGSIPPGIAHLDQLKVLILASNMLSGELPKFPASQELFHIDVKRNKIWGRLPSSMPVSVRYLSVSENRMWGPINGLESLSELVYLDLSMNQFSGPIPKSLFHSRLNSMLLQRNNFSGGVPTDASSTSYAQGSIVDLSHNLLTGELSPILAGVETLFLNNNRLIGRVPDEYVNSISRGDTKTLYLQHNYISDFPMQSGLALPDSVSLCLSYNCMVPPVGLAACPASAGGQLSRPAYECSVYNNGTAP* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1308 417 ProSiteProfiles Leucine-rich repeat profile. 160 182 IPR001611 GO:0005515
Vvi3g1308 417 SMART LRR_typ_2 134 157 IPR003591 -
Vvi3g1308 417 SMART LRR_typ_2 250 274 IPR003591 -
Vvi3g1308 417 SMART LRR_typ_2 158 182 IPR003591 -
Vvi3g1308 417 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 14 409 - -
Vvi3g1308 417 Pfam Leucine rich repeat 136 195 IPR001611 GO:0005515
Vvi3g1308 417 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Vvi3g1308 417 SUPERFAMILY L domain-like 77 384 - -
Vvi3g1308 417 Gene3D Ribonuclease Inhibitor 205 388 IPR032675 -
Vvi3g1308 417 Gene3D Ribonuclease Inhibitor 30 204 IPR032675 -
Vvi3g1308 417 FunFam Nuclear pore complex protein NUP107 29 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1308 Vvi-Chr3 19047096 19048349 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1308 99 388 Receptor kinase-like Gene Family AT5G46330 31.333 4.14e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1308 - - vvi:100262125 794.653