Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1307 ATGGGGAAGCATGGTCTGGCTACCTGGTTGGTCATCCTTCTCAACTTCGCTACACTTCTCACTTCTCTTGCTTGTTCCTACTGCCCATCCCCAACTCCTCCTAAACCACCCAAGGTAAAGCACCCCCTTCCGCCTCTTCCACCTAAACATCCTCCACATGTCAAGCCACCGCATACACCTATGCCACCCAAGCCTCCTGTTGTAAAACCACCTTATGTGCCCAAGCCACCAGTGGTTCAGCCCCCACCGCCACCAGTGGTTCATCCCCCACCGCCACCAACACCGTGCCCACCACCACCACCCCCCAAGGGGAGGCCCCCACCACAACAGACATGCCCCATTGACACTCTGAAGCTAGGTGCATGTGTGGATTTGTTGGGAGGGCTTGTGCACATTGGGATAGGAAGTAGTGCTAAGGACACATGCTGTCCAGTGCTGCAAGGGCTTGTGGACTTGGACGCTGCCGTCTGTCTTTGCACCGCCATCAAAGTCAAGCTTCTTAACGTCAATATCATCATACCCATTGCTCTTCAAGTCCTTGTTGGCTGTGGCAAGACTCCACCTTCAGGATTCCAATGCCCTGCCTAA 588 0.5459 MGKHGLATWLVILLNFATLLTSLACSYCPSPTPPKPPKVKHPLPPLPPKHPPHVKPPHTPMPPKPPVVKPPYVPKPPVVQPPPPPVVHPPPPPTPCPPPPPPKGRPPPQQTCPIDTLKLGACVDLLGGLVHIGIGSSAKDTCCPVLQGLVDLDAAVCLCTAIKVKLLNVNIIIPIALQVLVGCGKTPPSGFQCPA* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1307 195 Gene3D - 106 195 IPR036312 -
Vvi3g1307 195 Pfam Hydrophobic seed protein 111 194 IPR027923 -
Vvi3g1307 195 SMART aai_6 112 193 IPR016140 -
Vvi3g1307 195 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 114 194 IPR036312 -
Vvi3g1307 195 PANTHER - 13 193 - -
Vvi3g1307 195 MobiDBLite consensus disorder prediction 34 71 - -
Vvi3g1307 195 MobiDBLite consensus disorder prediction 84 110 - -
Vvi3g1307 195 CDD HPS_like 110 193 IPR027923 -
Vvi3g1307 195 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Vvi3g1307 195 MobiDBLite consensus disorder prediction 84 109 - -
Vvi3g1307 195 PRINTS Proline rich extensin signature 63 79 - -
Vvi3g1307 195 PRINTS Proline rich extensin signature 80 97 - -
Vvi3g1307 195 PRINTS Proline rich extensin signature 36 57 - -
Vvi3g1307 195 PRINTS Proline rich extensin signature 22 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1307 Vvi-Chr3 19020430 19021323 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1307 106 194 Acyl Lipid Metabolism Gene Families AT4G22520 35.556 3.68e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1307 - - vvi:100233114 195.667