Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1306 ATGGACCCAAGAAAACACTCTACTAGAATGTTCAATATAGTTGTGTTCATCTTCATTTCAGTCACCACCCTGATTATAAGTACCCCATGTGATGCAAGAAGTTCAGCACAAATGTTGGAGGTTGAAGGTGAGGAGTTTGGTGAAAGTTCAGTCACTGGGGGGAGGAAGATGCAACAAGTAGCAGTAAACTTGGAGAATACTGACTCATACATAAGCTCTCCATTTTCTCTACCACCTTTTGATTCATTGTCACCACTTCCCTCACCAGAGACAGCCCCTCCCTTTTGTGTTTGCCCACCATTTTCCCCACAGCCACCTTCCATACCCACTACTCCACCCATATTCCAAGGCCCTCCTACACATTCCCCAGTTCCAAATCCTCCTGAATATGAGCTGCCTAGTCCCCCCAAGCATGCGCCAAGCTCACCGAAGCGCGCTCCGAGCCCGCCAGTCTTTAAGCCTCCGGTGGTTCTACCACCACCATCTACACCGCCTCCACTACATAAGGCACCCCAGTATGCTGTTTGGTGTGTCGCAAAGCCGACGGTGCCTGATCCCATAATTCAGGAGGCCATGGACTATGCCTGCGGAAAAGGTGCAGACTGTGAAGCAATTAAGCCCGACGGGTTATGCTTCCAACCCAATACATTGTTTGCGCATGCTTCATATGCTTTCAATAGTTACTGGCAGAGGACTAAGGTGGCTGGTGGCACCTGCGACTTTGGAGGAACTGCAATGCTTGTTACAGTTAATCCAAGTTTTGATGAATGCCATTTTGTCTACAATTGA 789 0.4854 MDPRKHSTRMFNIVVFIFISVTTLIISTPCDARSSAQMLEVEGEEFGESSVTGGRKMQQVAVNLENTDSYISSPFSLPPFDSLSPLPSPETAPPFCVCPPFSPQPPSIPTTPPIFQGPPTHSPVPNPPEYELPSPPKHAPSSPKRAPSPPVFKPPVVLPPPSTPPPLHKAPQYAVWCVAKPTVPDPIIQEAMDYACGKGADCEAIKPDGLCFQPNTLFAHASYAFNSYWQRTKVAGGTCDFGGTAMLVTVNPSFDECHFVYN* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1306 262 Gene3D - 171 261 - -
Vvi3g1306 262 PANTHER BETA-1,3 GLUCANASE 64 259 IPR044788 -
Vvi3g1306 262 Pfam X8 domain 176 246 IPR012946 -
Vvi3g1306 262 SMART X8_cls 175 259 IPR012946 -
Vvi3g1306 262 MobiDBLite consensus disorder prediction 107 157 - -
Vvi3g1306 262 FunFam Glucan endo-1,3-beta-glucosidase 4 170 262 - -
Vvi3g1306 262 PRINTS Proline rich extensin signature 112 128 - -
Vvi3g1306 262 PRINTS Proline rich extensin signature 150 175 - -
Vvi3g1306 262 PRINTS Proline rich extensin signature 132 149 - -
Vvi3g1306 262 PRINTS Proline rich extensin signature 89 110 - -
Vvi3g1306 262 PRINTS Proline rich extensin signature 76 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1306 Vvi-Chr3 19009163 19010727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1306 176 259 Glycoside Hydrolase AT4G26830 51.765 1.16e-23 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1306 - - vvi:100241626 418.313