Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1301 ATGGGGAAGCTTGGTCTGGCTACCTGTTTGCTCATCCTTCTCAACTTGGCTACACTCCTCACTTCTCTTGCTCGTCCCTACCCCCCATACCCAACTCCTCCTAAACCAGCCAATAAAACGCACCCCCTTCTGACCCTTCCAGATAAACATCCTCCATACGTCAAGCCAGCGCATACACCTAAGCCACCCAAGCCTCCGGTGGTCAAGCCACCCAAGCCTCCGGTGGTCAAACCACCCTACGTGCCTAAGCCTCCGGTTGTCAAGTCACCAGTGATTCCAAAGCCACCCCCAGTCGAGACACCATGCCCTCCTCCCCCACCGCCACCACCACTGTACCCACCTCCGGCCCAGGTGACGCCCCCGCCACAAAAGACATGCCCCATTGACACTCTGAAGCTGGGTGCATGTGTGGATTTGTTGGGAGGGCTTGTGCATGTTGGGATAGGAAGTAGTGCTAAGGACACATGCTGTCCGGTGCTGCAAGGGCTTGTGGACTCGGACTCTGCCCTGTGTCTTTGCACCACCATCAAGGCCAAGCTTCTTAATGTCAATATCATCATACCCATTGCTCTTCAAGTCCTTGTTGACTGTGGCAAGACTCCACCTCCAGGATTCCAATGCCCTGCCTAA 630 0.554 MGKLGLATCLLILLNLATLLTSLARPYPPYPTPPKPANKTHPLLTLPDKHPPYVKPAHTPKPPKPPVVKPPKPPVVKPPYVPKPPVVKSPVIPKPPPVETPCPPPPPPPPLYPPPAQVTPPPQKTCPIDTLKLGACVDLLGGLVHVGIGSSAKDTCCPVLQGLVDSDSALCLCTTIKAKLLNVNIIIPIALQVLVDCGKTPPPGFQCPA* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1301 209 MobiDBLite consensus disorder prediction 30 80 - -
Vvi3g1301 209 MobiDBLite consensus disorder prediction 56 80 - -
Vvi3g1301 209 PANTHER - 9 207 - -
Vvi3g1301 209 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 128 208 IPR036312 -
Vvi3g1301 209 CDD HPS_like 125 207 IPR027923 -
Vvi3g1301 209 SMART aai_6 126 207 IPR016140 -
Vvi3g1301 209 Gene3D - 120 209 IPR036312 -
Vvi3g1301 209 PRINTS Proline rich extensin signature 62 79 - -
Vvi3g1301 209 PRINTS Proline rich extensin signature 22 43 - -
Vvi3g1301 209 PRINTS Proline rich extensin signature 45 61 - -
Vvi3g1301 209 PRINTS Proline rich extensin signature 85 110 - -
Vvi3g1301 209 Pfam Hydrophobic seed protein 125 208 IPR027923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1301 Vvi-Chr3 18943192 18943821 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1301 125 208 Acyl Lipid Metabolism Gene Families AT4G22490 33.333 2.33e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1301 - - vvi:100260368 200.675