Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1299 ATGGCCTCCGCTGCTTTGCCTCATCCGGTCTCACCACCCTCTCCTCACGCCACCACTGCCACACCAGCCCATGAACCCACCAGTCTGCCCCCCAAAACCCCTCCTAAACCCCCCACAATCCGCTCAAGGCTCAGTCACCTATGCCGCCAAGGCCACCCCCACCAAGCTCTCCACCTCTTCGACTCGATTCCACGCCCAACCACCGTCCTTTGGAACACCATCATCATCGGCTTCATCTGCAACAACATGCCCATTGATGCTCTCTTGTTCTACGCCCGAATGAGAGCCTCCCCATCTCCCAAATTCGACTCCTACACCTTCTCTTCCACCCTCAAGGCTTGCGCCCAAGCTCGCTCTCTCAAGCTCGGTAAAGCCCTCCACTGCCACGTTCTCCGTTCCCACTTCGGTTCTAGTAGAATTGTTTATAATTCTCTCCTCAATATGTACTCTACTTGTTTGACTGAAGTGCCTTATCTGGGTACTGCTTATGATTTTAACAATTGTGATTTAGTGCGCAGAGTGTTTGACACAATGCGTAAGAGGAATGTGGTTGCTTGGAACACTATGATTTCTTGGTATGTTAAAACAGAAAGACTCATAGAGGCGTTCAAGATGTTTAGGACAATGATGAGAATGGGAATTAGGCCGACCCCAGTTAGCTTTGTTAATGTTTTCCCTGCTGTTTGGAGGATGAGTGATTATGATAATGCTAATGTTCTTTACGGTTTGGTCGTTAAACTGGGTAGTGATTTTGTGGATGATTTTTTTGTTGTGAGTTCAGCTATTTTCATGTATGCCGAGCTTGGTTGTGTTGATTTTGCTAGGGAGATTTTTGACTGTTGTTTAGAGAGGAATACAGAGGTTTGGAACACTATGATTGGCGGGTATGTGCAGAATAATTGCCCCATTGAAGCAATTGATCTTTTTGTTCAAGTTATGGAGTCAGAGCAGTTTGTTCTTGATGATGTAACTTTTCTCTCTGCTTTAACTGCAATTTCACAATTGCAGTGGTTGGAATTGGGCCGACAGCTACATGCATATATACTCAAGAGTTCAACAATATTACAAGTTGTTATACTGAATGCAATCATTGTCATGTACTCAAGGTGCGGTTCTATCGGGACATCGTTCAAGGTTTTCAGTAACATGTTGGAAAGAGATGTCGTTACATGGAATACCATGGTTTCTGCATTTGTGCAGAATGGGCTGGATGATGAAGGGTTAATGCTTGTGTTTGCGATGCAGAAGCAAGGATTTATGGTTGATTCTGTAACATTAACTGCTTTGCTTTCATTAGCGTCAAACCTTAGAAGCCAGGAAATAGGCAAGCAAGCCCATGCTTACCTCATTCGACATGGAATTCAATTCGAGGGAATGGACAGTTACCTTATAGACATGTATGCAAAATCAGGTTTAATTACTACCGCCCAGCAACTTTTTGAGAAAAACAGTGATTATGATAGAGACGAAGCCACATGGAATGCCATGATTGCTGGTTACACTCAAAATGGGCTGAGTGAAGAGGGTTTTGCTGTATTCAGGAAGATGATAGAGCAAAATGTAAGACCCAATGCTGTGACCTTAGCATCAATTCTCCCAGCCTGCAATCCAATGGGAACTATTGGTTTGGGTAAGCAAATCCATGGCTTTGCCATTCGCTGCTTCCTCAACCGAAATGTCTTTGTGGGAACTGCTCTACTAGACATGTACTCAAAATCAGGTGCAATCACCTATGCAGAAAATGTGTTTGCTGAAACCCTTGAAAAAAATTCAGTCACTTACACCACCATGATATCGAGTTATGGTCAACATGGAATGGGTGAGAGAGCTCTCTCTCTCTTTCACGCAATGCTGGGATCTGGTATTAAACCTGATTCTGTTACCTTTGTTGCAATCTTGTCTGCTTGTAGTTATGCTGGGTTGGTAGATGAAGGTCTTAGAATATTTCAGTCAATGGAAAGAGAATATAAAATTCAGCCTTCTGCTGAGCATTACTGTTGTGTTGCAGACATGTTAGGGAGGGTTGGGCGGGTGGTGGAAGCCTACGAATTTGTTAAAGGACTGGGGGAAGAGGGTAATACATTCGGAATTTGGGGATCACTTCTTGGGGCCTGCCGAATTCATGGAGAATTTGAATTGGGTAAAGTTGTTGCCAACAAATTGCTTGAAATGGAGAAAGGAAGCAGTTTGACTGGCTATCATGTTTTGTTGTCAAATATATATGCAGCAGAAGGAAACTGGGACAATGTTGATCGGGTGAGAAAAGAGATGCGGCAAAAAGGTTTGATGAAGGAGGCTGGCTGCAGTTGGGTTGAGGTTGCAGGGCATGTGAACTGCTTTATGTCTAGGGATCATAAGCACCCTCAGTGTGCTGAAATATATCAAATGTTAGAAAAATTGGCCATGGAGATGAAAGATGCTGGTTATAAGCCTTGTCTCAATTTACAAACAGGGGGGATCTCTGCATCTGAGGAGTGA 2478 0.4391 MASAALPHPVSPPSPHATTATPAHEPTSLPPKTPPKPPTIRSRLSHLCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCAEIYQMLEKLAMEMKDAGYKPCLNLQTGGISASEE* 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1299 825 Gene3D Tetratricopeptide repeat domain 333 458 IPR011990 GO:0005515
Vvi3g1299 825 FunFam Pentatricopeptide repeat-containing protein chloroplastic 234 342 - -
Vvi3g1299 825 Pfam PPR repeat family 181 224 IPR002885 -
Vvi3g1299 825 Pfam PPR repeat family 489 534 IPR002885 -
Vvi3g1299 825 Pfam PPR repeat family 589 636 IPR002885 -
Vvi3g1299 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 625 655 IPR002885 -
Vvi3g1299 825 SUPERFAMILY TPR-like 179 683 IPR011990 GO:0005515
Vvi3g1299 825 FunFam Pentatricopeptide repeat-containing protein mitochondrial 561 786 - -
Vvi3g1299 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Vvi3g1299 825 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 251 811 IPR046960 GO:0003723|GO:0009451
Vvi3g1299 825 MobiDBLite consensus disorder prediction 1 41 - -
Vvi3g1299 825 Pfam E motif 708 772 IPR046848 -
Vvi3g1299 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Vvi3g1299 825 Gene3D Tetratricopeptide repeat domain 35 155 IPR011990 GO:0005515
Vvi3g1299 825 Gene3D Tetratricopeptide repeat domain 158 248 IPR011990 GO:0005515
Vvi3g1299 825 Gene3D Tetratricopeptide repeat domain 459 542 IPR011990 GO:0005515
Vvi3g1299 825 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 343 440 - -
Vvi3g1299 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Vvi3g1299 825 NCBIfam pentatricopeptide repeat 389 422 IPR002885 -
Vvi3g1299 825 NCBIfam pentatricopeptide repeat 592 626 IPR002885 -
Vvi3g1299 825 NCBIfam pentatricopeptide repeat 492 525 IPR002885 -
Vvi3g1299 825 NCBIfam pentatricopeptide repeat 184 217 IPR002885 -
Vvi3g1299 825 NCBIfam pentatricopeptide repeat 627 661 IPR002885 -
Vvi3g1299 825 NCBIfam pentatricopeptide repeat 288 321 IPR002885 -
Vvi3g1299 825 Gene3D Tetratricopeptide repeat domain 249 332 IPR011990 GO:0005515
Vvi3g1299 825 Gene3D Tetratricopeptide repeat domain 564 807 IPR011990 GO:0005515
Vvi3g1299 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 320 IPR002885 -
Vvi3g1299 825 FunFam Tetratricopeptide-like helical 447 538 - -
Vvi3g1299 825 Pfam PPR repeat 358 387 IPR002885 -
Vvi3g1299 825 Pfam PPR repeat 389 419 IPR002885 -
Vvi3g1299 825 Pfam PPR repeat 288 312 IPR002885 -
Vvi3g1299 825 Pfam PPR repeat 69 96 IPR002885 -
Vvi3g1299 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 590 624 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1299 Vvi-Chr3 18931865 18934342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1299 85 815 Glycoside Hydrolase AT3G49170 32.928 7.40e-127 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1299 - - vvi:100256920 1597.79