Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1296 ATGATAAAGAGGTTTTTGATATTACTTGGGGCGGTGTTGGAGTTTTCACTTCTATTTCTGCTGATGACTAGGTTATGGTCTTTGATTTGCACTAATAAGAAGCGTTCGATGATTATCTATGAGAGCTCCGAGCCCGACACTCCTCTTATTCGGCTCGGTTGGAACAAACAAGATTCTAGGTACATGGCTACTATCATCATGGATAGCGCCAAGGTCATGGTGCTCGACATCCGCTTCTCTACTTTCCCAACGGTGGAATTACAAAGGTACCAAGCCAGTGTCAATGCTATTGCACAGGCGCCCCATAGTTCTTGCCATATTTGCACTGTCGGCGGTGATTCACAGGCTCTAATATGGGATTTGTCATCCATGTGCCAACCTGTGGAAGGGGAGTTGGATCCGATTTTGGCATACACTGCGGGGGGCAGAAATAGAGCAACTGTAGTGGTCCTCCTCTCAGCCCGATTAGGTTGCAATTGCCTTCTCGACTAA 492 0.4695 MIKRFLILLGAVLEFSLLFLLMTRLWSLICTNKKRSMIIYESSEPDTPLIRLGWNKQDSRYMATIIMDSAKVMVLDIRFSTFPTVELQRYQASVNAIAQAPHSSCHICTVGGDSQALIWDLSSMCQPVEGELDPILAYTAGGRNRATVVVLLSARLGCNCLLD* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1296 163 Gene3D - 22 148 IPR015943 GO:0005515
Vvi3g1296 163 PANTHER WD REPEAT CONTAINING PROTEIN 32 141 IPR045159 -
Vvi3g1296 163 SUPERFAMILY WD40 repeat-like 24 124 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1296 Vvi-Chr3 18899577 18900068 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1296 K11805 - cit:102615088 191.045