Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1293 ATGGCTCGTACCTCTCACCTAGCATTTGCCATTCAAGCTATAGGACATATTGTATCAACTGTGGAGTTTGCTAAGCTTCTTGTTGGTAGAGATGACCGCTTCTCAGCCACTCTGCTCATCATGAAGCTACCTTTTGAGGACTCTGCGGCAACCAACTATATCCATTCAGTTTCTGCTTCCGTTTCCGGGTCCATTCGATTTGTCCACCTTCCTGAACTCGACTCAGATTCATCATCGTCATCCACTAGTATCTTATTCTCTAATATCATTGAAAGGCAGAAGCCTCTGGTGAGGGATGCAATTCACCATCTCACTCGGTCTGAGTCAGGTCGACTCGCTGGGATTGTGGTCGATTTGCTTTGCACTTCCATGATAGATGTAGCTAATGAATTGGGTGTTCCTTCCTACGTGTACTTCGCCTCCAGTGCGGCCTGCCTTGCTCTCATGTTTCATCTTCAAACCCTCAAGGACCACCAGGGCTTGGATGTTACTGAGTTTGCTAACTCGGATGCTGAGTTGGTGGTCCCGGGTTTTGTCAACTCGGTTCCTGCTCGAGTCTTGCCTGCTGTGGCGGTGGACAAGGAGGGTGGCGGATCCATGGATTTCCTCGACCGGGCAAGGGGCTTTAGAGAGGCCAAGGGTATTTTGGTAAATACGTTTGTGGAGCTAGAATCTCATGTGATTAACTCCTTTGTCGATGGTACAACTCCTCCCATTTACACAGTAGGGCCGTTATTGAACTTACAACATGCCAACAACCAAAAACAAGATAGTGGCTTGGATGTCATCCGATGGCTTGATGATCAGCCCACATCATCTGTGGTGTTTTTATGTTTTGGTAGCGCTGGAGCATTCCACATGGATCAAATCAAGGAGATTGCAATTGGGCTTGAGAATAGTGGGCATGGTTTCTTGTGGACACTCCGAAGACCTCCACCAAAAGATAAGATGACACTATCTAGTGATTATGTGAATTTCAATGAAGTATTACCTGAAGGGTTCTTAGATCGTACATCTAAAATTGGAAAGATAATTGGATGGGCACCACAAGCGGCTGTTTTAGCTCACTCTGCAGTAGGAGGGTTTATATCTCATTGTGGGTGGAATTCTACATTAGAAAGCATATGGTATGGTGTCCCAGTAGCTACATGGCCTATGTATGCAGAACAACAATTGATTGCGTTTCAAATAGTAAGAGAGTTAGAAATAGGGGTAGAGATTAGATTTGATTATAACATGAATACTAGTAATCTTGTAAGTGCTCAAGAAATTGAGGGTAAAATAAGAAGTTTAATGGATGGTAGCAGCGACATTAGAATGAAAAGGACAAGAATGAAAGAAAAGTGCATGAAGGCCTTGACAGAAGGTGGATCTTCAGACTCTAGCATACAACGTCTAATTGGAGACATGATAACTAATATCTCATGA 1428 0.4405 MARTSHLAFAIQAIGHIVSTVEFAKLLVGRDDRFSATLLIMKLPFEDSAATNYIHSVSASVSGSIRFVHLPELDSDSSSSSTSILFSNIIERQKPLVRDAIHHLTRSESGRLAGIVVDLLCTSMIDVANELGVPSYVYFASSAACLALMFHLQTLKDHQGLDVTEFANSDAELVVPGFVNSVPARVLPAVAVDKEGGGSMDFLDRARGFREAKGILVNTFVELESHVINSFVDGTTPPIYTVGPLLNLQHANNQKQDSGLDVIRWLDDQPTSSVVFLCFGSAGAFHMDQIKEIAIGLENSGHGFLWTLRRPPPKDKMTLSSDYVNFNEVLPEGFLDRTSKIGKIIGWAPQAAVLAHSAVGGFISHCGWNSTLESIWYGVPVATWPMYAEQQLIAFQIVRELEIGVEIRFDYNMNTSNLVSAQEIEGKIRSLMDGSSDIRMKRTRMKEKCMKALTEGGSSDSSIQRLIGDMITNIS* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1293 475 Gene3D Glycogen Phosphorylase B; 253 451 - -
Vvi3g1293 475 FunFam Glycosyltransferase 8 256 - -
Vvi3g1293 475 PANTHER GLYCOSYLTRANSFERASE 11 470 - -
Vvi3g1293 475 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 269 398 IPR002213 GO:0008194
Vvi3g1293 475 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 9 471 - -
Vvi3g1293 475 Gene3D Glycogen Phosphorylase B; 9 463 - -
Vvi3g1293 475 CDD GT1_Gtf-like 7 459 IPR002213 GO:0008194
Vvi3g1293 475 FunFam Glycosyltransferase 257 451 - -
Vvi3g1293 475 ProSitePatterns UDP-glycosyltransferases signature. 347 390 IPR035595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1293 Vvi-Chr3 18846514 18863031 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1293 15 475 Glycosyltransferase AT3G21760 45.570 1.34e-136 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1293 - - vvi:100244985 906.36