Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1286 ATGGCGGAGACGACGGAATTGAGAGTGTACAACACCATGACTCAGCAGAAGGAGATCTTCAAGCCCGTTGTCGATGGCAAAGTGTCCATGTACGTCTGCGGTGTCACCGCTTACGACCTCAGTCATCTTGGCCACGCCCGCGCCGCCGTCTGCTTTGACGTCCTCTACCGGTGCGGGTTTAGCGTAAAAGTAAGAGGTCTATCTGGTGTGATGAAAGTGTGTGACAATTCAGAATTCTGA 240 0.525 MAETTELRVYNTMTQQKEIFKPVVDGKVSMYVCGVTAYDLSHLGHARAAVCFDVLYRCGFSVKVRGLSGVMKVCDNSEF* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1286 79 Pfam tRNA synthetases class I (C) catalytic domain 20 58 IPR032678 -
Vvi3g1286 79 Gene3D HUPs 1 68 IPR014729 -
Vvi3g1286 79 PANTHER CYSTEINYL-TRNA SYNTHETASE 4 63 IPR024909 -
Vvi3g1286 79 SUPERFAMILY Nucleotidylyl transferase 6 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1286 Vvi-Chr3 18644861 18645262 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1286 K01883 - vvi:100854736 119.398