Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1283 ATGAGAGGTCGACATGTGCCAAGAATATTCCAAGAAAAGCTGCAGGCCGTTAGTGAGCTAGGTTGGTGCTTTTGCTGCCGTTTTGGGGGGATATTTTGTAGAGTATTCTGCATCCACAAGGAGGAGGCTGTTGTGCTTGGAGAGTCTCTTGGAGAGCAACTTGAGGAGCAAGCTGCCAAAGTGAGGTTTGGGTGGTTGCTTTACAGAGACATTTTTGGGAAGAGGTTTTTCTTTGCCTTGGAGAGCAAGCTAGCTAGGGACGGAGAGAGTAACGTGAGAGAGACACCTTGGAGAGGAGCAAGGTATTCTGTTGTCTGGGAGGAGATGTTTTGGTTGCTTGAGAGGTTACAGAGGGAGGGAGCTGCAGTGTGGTCACTAGAAGAGCCGGTTCTTCCATGTTCATGCCATTTTATTGTGTTTTCTGGGTATCATGAGATTCTATTTTGGTGTTTGAATGTGTTTATTGGGGACTCTCGTTTGTTTTTATGGAATTTGAGCTTGCTTGCACTCGCCTTATATTTCCCATCTCTACCTGAAAGAGTAAGGCGCTGCCGGAGAAAATCTGGTTTGGGTGCTTCTGAAGGAGTTCAGCATCAGAGTCTCTGGGAGATATCTGGACAAGGAAAACAGATAGGATTGCTTGGACAGTTTAAGTTGATGAATTTGTTGAAGCTGCATGACGTAACGACGACTGATCTTTTGATTCGTGCCTCCTCTGAGGAAGCAACTATATATGATGGCAATATAGTACAAAATCTGGTTGAGGGGTTTGTGATTCATGACCGGAGTGCTCCTGGGGAAAATGAATTCCAGGAGATTAGTAGCCCTGGGTGTGTCTCAAAAACTCTCAAGTTGATGGTGGTTAAGTTGGTTGATGGCTACCTTGCTGAAATGGTAACAGGCTTTTCAAGACCATCTCATGATGGACTTTACCACGCCATTGACATGTATCTGAAGGAACACCCTGGAATCAGCATGAGTGAGAGAAAGAGAATACGCCGGCTAATGGACTACAAGAGACTATCCACAAACACTTGCATGCACGCTGTACAAAATGAGCTGCTCTTGCGGGTTGTTGTGTAG 1083 0.4561 MRGRHVPRIFQEKLQAVSELGWCFCCRFGGIFCRVFCIHKEEAVVLGESLGEQLEEQAAKVRFGWLLYRDIFGKRFFFALESKLARDGESNVRETPWRGARYSVVWEEMFWLLERLQREGAAVWSLEEPVLPCSCHFIVFSGYHEILFWCLNVFIGDSRLFLWNLSLLALALYFPSLPERVRRCRRKSGLGASEGVQHQSLWEISGQGKQIGLLGQFKLMNLLKLHDVTTTDLLIRASSEEATIYDGNIVQNLVEGFVIHDRSAPGENEFQEISSPGCVSKTLKLMVVKLVDGYLAEMVTGFSRPSHDGLYHAIDMYLKEHPGISMSERKRIRRLMDYKRLSTNTCMHAVQNELLLRVVV* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1283 360 PANTHER OS12G0117600 PROTEIN 224 360 IPR043454 -
Vvi3g1283 360 Pfam NPH3 family 224 298 IPR027356 -
Vvi3g1283 360 Pfam NPH3 family 295 346 IPR027356 -
Vvi3g1283 360 ProSiteProfiles NPH3 domain profile. 224 360 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1283 Vvi-Chr3 18634737 18636342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1283 223 360 EF-hand Containing Proteins AT3G44820 33.962 3.47e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1283 - - vvi:109122327 250.366