Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1279 ATGGCGGAGACGACGGAATTGAGAGTGTACAACACCATGACTCAGCAGAAGGAGATCTTCAAGCCTGTTGTCGATGGCAAAGTGTCCATGTACGCCTGCGGTGTCACCGCTTACGACCTCAGTCATCTTGGCCACGCCCGCGCCGCCGTCTGCTTTGACGTCCTCTACCGAACATGTATAGAGAATGACCAGAATGGGAAGTGGATGCGTATCTGA 216 0.537 MAETTELRVYNTMTQQKEIFKPVVDGKVSMYACGVTAYDLSHLGHARAAVCFDVLYRTCIENDQNGKWMRI* 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1279 71 PANTHER CYSTEINYL-TRNA SYNTHETASE 4 59 IPR024909 -
Vvi3g1279 71 Pfam tRNA synthetases class I (C) catalytic domain 20 59 IPR032678 -
Vvi3g1279 71 Gene3D HUPs 1 70 IPR014729 -
Vvi3g1279 71 SUPERFAMILY Nucleotidylyl transferase 6 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1279 Vvi-Chr3 18546035 18548365 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1279 K01883 - vvi:100854736 117.857