Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1275 ATGAAGAAAGTAGAGTTCGTTTTTATCCCTCTTCCACTCATAGGCCACCTGGTACCAACTGTGGAGTTGGCAAAGCTTCTTGTTGATAGAGATGACCGCTTCTCAATCACTCTGCTCATCATGAAGCTGCCTATTGGCAATTCTGTGGTAACCAACTTTCTTCATTCAGTTTCTGCTTCCGTTTCTGGTTCTATTCGATTTGTCCATCTTCCTGAACCCGGCTCGGATTCATCCAACTCCGATCCATCATCGTCATCGCGGGGTCCCTTCGTCCATAATCTCATTGAAAACCAGAAGCCTCTCGTGAGGGATGCAGTCCACCAGCTCGTTCAGTCTGGTGAGTCGGGCCGACTCGGTGGGATTGTGGTTGATCTGACTTGCACTTCCATGATAGATGTGGCTAATGAATTGGGCGTTCCTTCGTATGTATTCTTCACCTGCAGTGCGGCCCTTCTTGCTCTCATATTTCATCTTCAAACCCTGAAGGACCATCAGGGCGTGGATGTCACTGAGTTTGGTGACTCGGATATTGAGTTGGTGGTCCCAGGTTTTGTCAACTCGGTTCCTGCTCGAGTCTTGCCTGCTGCCGCGGTGGACAAGGAGGGCGGCGGATCCACCGTGTTCCTTGACCGGCCAAGGAGGTTTAGAGAAACCAAAGGTATTTTGGTAAACACGTTCATAGAGTTAGAATCCCATGCAATAAACTCGTTTGGGAATGGTACAACTCCTCCGGTGTACCCGGTGGGACCCCTCTTGAACTTAAAGCATGACCAAAATCGTGAGTTGGATGTCATCCACTGGCTTGATGATCAACCTCCATCTTCTGTGGTGTTTTTATGCTTTGGTAGCCTTGGAGCATTTAACAAAGGTCAAATAATGGAGATAGCAAATGGGCTTGAAAATAGTGGATTTCGTTTTGTATGGACCCTTCGTGGACCTCCACCAAAAGATGATATTGCGTCTAGTGATTATACAGATTTTGATGAAGTTCTGCCTAAAGGATTCTTAAATCGGACGTTTGGGGTTGGAAAGATAATTGGATGGGCACCACAAACGGATATCTTATCCCACCATGCCATAGGAGGGTTTATATCTCATTGTGGATGGAATTCCATATTAGAGAGCATATGGTATGGTGTACCAATAGCTACATGGCCAATGGATGCAGAACAACAACTTAATGCATTTCAAATGGTTAGAGAATTGGGAATAGCAATAGAAATCAAATTGGATAACAAAAAAAATGTTAGTGATCTTGTAAATGCTCAAGAAGTGGAGAGTAAAATAAAAAGTTTGATGGATAATAGTAGTGACGTCAAAAGAAAGGGAAAAGAGATGAGAGAAAAGTGTGTGCAGGCCCTTATGAAGGGTGGATCTTCACACAATTACTTGCAATGTCTAATAGAAGACATGACTAGTAACATGTAA 1428 0.4426 MKKVEFVFIPLPLIGHLVPTVELAKLLVDRDDRFSITLLIMKLPIGNSVVTNFLHSVSASVSGSIRFVHLPEPGSDSSNSDPSSSSRGPFVHNLIENQKPLVRDAVHQLVQSGESGRLGGIVVDLTCTSMIDVANELGVPSYVFFTCSAALLALIFHLQTLKDHQGVDVTEFGDSDIELVVPGFVNSVPARVLPAAAVDKEGGGSTVFLDRPRRFRETKGILVNTFIELESHAINSFGNGTTPPVYPVGPLLNLKHDQNRELDVIHWLDDQPPSSVVFLCFGSLGAFNKGQIMEIANGLENSGFRFVWTLRGPPPKDDIASSDYTDFDEVLPKGFLNRTFGVGKIIGWAPQTDILSHHAIGGFISHCGWNSILESIWYGVPIATWPMDAEQQLNAFQMVRELGIAIEIKLDNKKNVSDLVNAQEVESKIKSLMDNSSDVKRKGKEMREKCVQALMKGGSSHNYLQCLIEDMTSNM* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1275 475 CDD GT1_Gtf-like 6 449 IPR002213 GO:0008194
Vvi3g1275 475 Gene3D Glycogen Phosphorylase B; 258 452 - -
Vvi3g1275 475 PANTHER GLYCOSYLTRANSFERASE 5 472 - -
Vvi3g1275 475 Gene3D Glycogen Phosphorylase B; 7 464 - -
Vvi3g1275 475 FunFam Glycosyltransferase 258 452 - -
Vvi3g1275 475 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 274 422 IPR002213 GO:0008194
Vvi3g1275 475 FunFam Glycosyltransferase 7 257 - -
Vvi3g1275 475 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 6 472 - -
Vvi3g1275 475 ProSitePatterns UDP-glycosyltransferases signature. 348 391 IPR035595 -
Vvi3g1275 475 Coils Coil 422 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1275 Vvi-Chr3 18509235 18510662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1275 3 475 Glycosyltransferase AT3G21780 45.885 1.18e-144 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1275 - - vvi:100246756 944.11