Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1273 ATGAAGAAAGCTGAGCTGGTGTTTGTCCCTCTCCCGTTCGTAGGCCACATGGTCTCCATTGTGGAGTTCGCAAAGCTTCTTGTTGATCGAGATGATCGCATCTCCGTCACTGTGCTCATCATGAAGCTGCCAGTACTTGAGCATTCCGTGGTGAACAACTACATCCATTTGCTTTCTGCTTCAGTTTCTGGGCGGATTCGGTTTGTCCACCTTCCTCAACTTAATCCCCAGTTGGCCTCCACCTCCCCCTCCAACTCCAAAGCTTTATCTCCAACCCATGTAATCTGCAGTTTCATTGATGACCAGAAACCTCTCGTGAGAGATGCAGTTAAGCAGCTGACTCAGTCTGTGTCCATCCGACTTGCCGGGTTTGTGTTTGATATGCTTTGCACATCCATGGTGGATGTAGCAGATGAATTGGGTGTTCCTTCTTATGTTTTCTTCACGGCCAGCTCGGCATTTCTTGGTCTCATGCTGCATCTTCAAGCCCTCCATGACAACCAGGGAGTGGATGTTACTGAGTTGGTTGACTCAGATGCTGAGTTGGTTGTCCCGAGTTTTGTCAACTCCGGTCCTGGTCGAGTCCTGCCTTCTGTGGTGGGGGACAAGCAGGGTGGTGGATCCACCGCTTTTCTCCGTTGTGTAAGGGGGTTTAAAGGAATGAAGGGTATTCTGGTGAATACATTTATGGAGTTAGAATCTCATGCGATTAACTCCTTTGTTGATGGTACATCTCCTCCGATCTATCCCGTGGGACCGATGTTAAACCTAAAGCATAGGGAACATCTGAACCATGATAATACTAACAAGGATATCATGAATTGGCTTGATGATCAACCTCCATCGTCTGTGGTATTCTTATGCTTTGGAAGTAATGGGTTCTTTCCTTTGGATCCGGTCAAAGAGATAGCACAAGGACTAGAGTGTAGCCGACATCGCTTCTTGTGGAGCCTTCGTCAACCTCCACCAAAGGGTGAGATTGCAATGCCAAGTGACTACGTGGATTTTGAAGAAGCGCTACCTCAAGGATTCTTGGATCGAACCATTGGAATTGGAAAGGTGATTGGATGGGCCCCACAATTAGATGTTTTAGCTCACCCATCAATTGGGGGGTTCGTATCTCATTGTGGATGGAACTCTATATTAGAAAGTCTATGGTATGGAGTGCCAGTAGCCACATGGCCGCTATACTCAGAGCAACAACTCAATGCATTTCAGATGGTAAAAGAGTTGGGACTGGCGATTGAGATTAAATTAGATTATAAGACAGGTGATAGTCATCTTGTGAGTGCTAAGGAGATTGAGAATGCAATAAGAAGTTTGATGATGAACGATAGTGAAGTTAGGAGAAGAGCAAATGAGATGAAAGAAGAAAGCACAAATGCTTTGATTGATGGTGGATCTTCACACACTTGCTTAGGACATCTAATTGAGGATATGATCACCAACATCGCATGA 1458 0.4568 MKKAELVFVPLPFVGHMVSIVEFAKLLVDRDDRISVTVLIMKLPVLEHSVVNNYIHLLSASVSGRIRFVHLPQLNPQLASTSPSNSKALSPTHVICSFIDDQKPLVRDAVKQLTQSVSIRLAGFVFDMLCTSMVDVADELGVPSYVFFTASSAFLGLMLHLQALHDNQGVDVTELVDSDAELVVPSFVNSGPGRVLPSVVGDKQGGGSTAFLRCVRGFKGMKGILVNTFMELESHAINSFVDGTSPPIYPVGPMLNLKHREHLNHDNTNKDIMNWLDDQPPSSVVFLCFGSNGFFPLDPVKEIAQGLECSRHRFLWSLRQPPPKGEIAMPSDYVDFEEALPQGFLDRTIGIGKVIGWAPQLDVLAHPSIGGFVSHCGWNSILESLWYGVPVATWPLYSEQQLNAFQMVKELGLAIEIKLDYKTGDSHLVSAKEIENAIRSLMMNDSEVRRRANEMKEESTNALIDGGSSHTCLGHLIEDMITNIA* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1273 485 CDD GT1_Gtf-like 7 458 IPR002213 GO:0008194
Vvi3g1273 485 Gene3D Glycogen Phosphorylase B; 7 473 - -
Vvi3g1273 485 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 6 481 - -
Vvi3g1273 485 ProSitePatterns UDP-glycosyltransferases signature. 357 400 IPR035595 -
Vvi3g1273 485 FunFam Glycosyltransferase 7 265 - -
Vvi3g1273 485 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 249 445 IPR002213 GO:0008194
Vvi3g1273 485 FunFam Glycosyltransferase 266 461 - -
Vvi3g1273 485 Gene3D Glycogen Phosphorylase B; 262 461 - -
Vvi3g1273 485 PANTHER GLYCOSYLTRANSFERASE 5 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1273 Vvi-Chr3 18463726 18465183 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1273 3 485 Glycosyltransferase AT3G21780 47.862 4.02e-151 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1273 - - vvi:104878931 975.696