Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1272 ATGAGAGCTCCAATGGAGACGATGAATAACACCGACTCCAGCACTCGTAATTCCAATTCCAATTACGATACGACGTCGTTGTCTGGAGACGACGGCCCCGTTCGTGTCTACGCTGATGGGATCTACGATCTCTTTCACTTCGGCCACGCTCGCTCTCTCGAGCAAGCCAAAAAATCGTTTCCAAACACGTATCTACTTGTTGGATGTTGCAATGATGAAACCACTCACAAGTTTAAAGGCAAAACTGTTATGAATGAAGTGGAGCGTTATGAATCTCTTCGCCACTGCAAGTGGGTTGATGAAGTTATTCCTGATGCACCATGGGTACTCACTCAGGAATTTCTTGACAAGCATAAAATTGACTATGTGGCCCACGACTCTCTTCCTTATGCCGATGCCAGTGGAGCTGGAAACGATGTTTATGAATTTGTTAAATCCATTGGAAAGTTTAAGGAAACAAAACGAACTGATGGGATTTCTACTTCAGACATTATAATGAGGATTGTTAAAGACTATAACCAGTATGTGATGCGTAACTTGGATCGTGGATATACGAGAAAAGATCTTGGTGTTAGCTACGTTAAGGAAAAGCGACTAAGGGTGAACATGAGACTTAAGAAACTACAAGAAAAAGTGAAGGAACAACAAGAAAAAGTAGAACAAAAGATTCAAATTGTTGCAAAAACCGCTGGTATGCATCGCAATGAATGGGTGGAAAATGCTGATCGCTGGGTTGCAGGATTTCTTGAGATGTTTGAAGAAGGTTGCCATAAAATGGGAACAGCCATCAGAGATCGTATACAAGAGCGGCTAATGGGGCAGCAGTCAGGAGGGTCCAAATATCTGCTGCCTAATGGCAAGGATGACATTGATAATGAGGATGAAGAATACTATGATGAAGATGATGAGGATGAAGAGTACTATGATGAGGAAGAATACTATGAGTCCTCAGACGAAGAGGAGAAAGAGAAGAAGGCAGAAAAGAAATAA 990 0.4202 MRAPMETMNNTDSSTRNSNSNYDTTSLSGDDGPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKFKGKTVMNEVERYESLRHCKWVDEVIPDAPWVLTQEFLDKHKIDYVAHDSLPYADASGAGNDVYEFVKSIGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLDRGYTRKDLGVSYVKEKRLRVNMRLKKLQEKVKEQQEKVEQKIQIVAKTAGMHRNEWVENADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGQQSGGSKYLLPNGKDDIDNEDEEYYDEDDEDEEYYDEEEYYESSDEEEKEKKAEKK* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1272 329 PANTHER CYTIDYLYLTRANSFERASE 17 319 IPR045049 GO:0004105|GO:0006657
Vvi3g1272 329 MobiDBLite consensus disorder prediction 289 317 - -
Vvi3g1272 329 FunFam Choline-phosphate cytidylyltransferase 2 14 254 - -
Vvi3g1272 329 MobiDBLite consensus disorder prediction 1 27 - -
Vvi3g1272 329 Coils Coil 198 225 - -
Vvi3g1272 329 Gene3D HUPs 2 254 IPR014729 -
Vvi3g1272 329 MobiDBLite consensus disorder prediction 274 329 - -
Vvi3g1272 329 Pfam Cytidylyltransferase-like 37 166 IPR004821 GO:0003824|GO:0009058
Vvi3g1272 329 CDD CCT 33 183 IPR041723 -
Vvi3g1272 329 NCBIfam cytidyltransferase-like domain 35 102 IPR004821 GO:0003824|GO:0009058
Vvi3g1272 329 SUPERFAMILY Nucleotidylyl transferase 35 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1272 Vvi-Chr3 18452459 18459775 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1272 60 309 Acyl Lipid Metabolism Gene Families AT2G32260 77.606 2.51e-142 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1272 K00968 - vvi:100267395 549.666