Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1271 ATGGCGAAGGTTGCTACAGCTGGTCCTTTATCTTCCAACTCTATTCGTTTTGGTGGGGTTTCTGGGAAGGTGGAGGCAGGAGTTAAAAGGAAGACACCATCGGAATTGAGAGGAGAGCAGTTAAAGCGAAGGAATGTTATAGAGCTTGTAGATGAATCTCCAGCTCCTTTGCTTGGTTCTACAAGGAACACCAATGAGCTCAAGAAACAAGATGTTTTCAAAGTTCCAAGATACATTGACACCCGTATGGATGAAGTTTTTCCTGCCAGAAAGTCTAGGTTTAGGATGCTTCCTGGAAAAGAAAATGCTAAGGAAGATATTTCAACTGAGCCGGCTGGCTGCGTGAAGAATATGCGTGTTTCTTCAAATTCAGTTGTCAAGAGTCATCCACAACTTTCATGTCCAGAGAATACTGTGGCTTCAGCTGCAGTTTCCAAAGATGGTACAAGGCAAGATTGTGAATATGCTGAAAAGTGCAGTCAAAGCACATTTCGTAGTGTGGCTGAATTATCACTTGGTAGTGAGAGGATATCTGAAATAGTTTCTGTTGATATGGATAGAGCATTAAAAGGACTGGTTGCCCGTGAACCCCCTGCTTTTTCTGGTTTAGCTGCTGATTCTTCTGAAAAGTTTGGCAATCTTACTTCAATCTCTTCTGGCAATTTCTGCTCTGAATTTCATATTCCTGGGCAAAAGGCCCCACTGGATTTTACGTTAAAAACTAATATGCAGATAGTGTCTTCTTCCTCTGTGAACTGGTTTCATAGATTGAACATGTCTGCTACTTACAATGGTACGACCCTATTCACACCTCAATTTGGTTGTTCCAAAGATCAAAATATTAGCTGCTCCTCTGGGCTCACTTCCACTGCCCAAATATTCAATTATAGAGCTTTGCACTCCTGGGTACACCCTCAATCTTCTCTACCACCATCTGTCATATCAGCATTGACCTTATCTGCTGCAGAGGGAGATTTCTTAATCAAACGACAACTAGCATGGGAGGACTCATTTCGAAGTCTCTATTACATGCTTAGAAAGAATATCTGTAATATCTTCTATGTTTGTACTTCACAGTTTGTGGTGGTGTTTGCTGGTGGTGACGGCTCAGGAGGAAAGAAACAGTCCTGTAATGCTTATATCTCCCAGTCAACAAGAGGCTTAAGGTCATTGCTGAGAGAGCATGATGTTTGTTTCTCTATGCCTCTTTGCCATTCTAAAGTAGAACAAGCCACCACTGAAGACCTGGTTGAGCTCTCAGAGATTGAGAAATGCAATCTGGGCCAGACTCGACGTCTTGGTTCCATATCTGATGTGGATAACAGCCCACAGTCTTTGCTGTCTTTCAGTGGAAACAAGAATGTGCATGCTTTATATGACTTTATGCTAAATTATAGATCTTTCTTGACGTCCTTGACAAGTGTGGATGTTCCTCTTCTGTATTCACCTGTTCCATTTCAGAATGCTGCTCTTTCTGCTCCAGAGGTCAGTTGCAGGGAGTTGAAGAGAGCTGATCATGTTGCTTTTCCTCTTAAAGGATCCAAAATGAAAGACGAAGCAATTGAAAGTGTTTCAGCTGGTCTCTCCTATAGCATTGAAATCAAGGATGCGTACATTCCACCGTGGATAATATCCAGTATATGTGCAACCATGGGTTCTGAAGGGAGGAGCTTTGAGGCAAGTTTTACAACAGAGCCTACTTCAATTGGCCTAAATGCTGCTGTTGAAACTGTTGGCCAGAAATCTGATACCCAAGCAGCAACAGGTGAAGCCATACAAGAAAGCACATATGCATTTGGGGTTCCGGAGGCTGTTGTAACTTCTTACATGCATTCGGCCTTTTTAAAAGGCTTGAAATATGCCAATGGTTCTTATACGGCTCGTCTTTCTCCTGTATAA 1899 0.4234 MAKVATAGPLSSNSIRFGGVSGKVEAGVKRKTPSELRGEQLKRRNVIELVDESPAPLLGSTRNTNELKKQDVFKVPRYIDTRMDEVFPARKSRFRMLPGKENAKEDISTEPAGCVKNMRVSSNSVVKSHPQLSCPENTVASAAVSKDGTRQDCEYAEKCSQSTFRSVAELSLGSERISEIVSVDMDRALKGLVAREPPAFSGLAADSSEKFGNLTSISSGNFCSEFHIPGQKAPLDFTLKTNMQIVSSSSVNWFHRLNMSATYNGTTLFTPQFGCSKDQNISCSSGLTSTAQIFNYRALHSWVHPQSSLPPSVISALTLSAAEGDFLIKRQLAWEDSFRSLYYMLRKNICNIFYVCTSQFVVVFAGGDGSGGKKQSCNAYISQSTRGLRSLLREHDVCFSMPLCHSKVEQATTEDLVELSEIEKCNLGQTRRLGSISDVDNSPQSLLSFSGNKNVHALYDFMLNYRSFLTSLTSVDVPLLYSPVPFQNAALSAPEVSCRELKRADHVAFPLKGSKMKDEAIESVSAGLSYSIEIKDAYIPPWIISSICATMGSEGRSFEASFTTEPTSIGLNAAVETVGQKSDTQAATGEAIQESTYAFGVPEAVVTSYMHSAFLKGLKYANGSYTARLSPV* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1271 632 PRINTS Downstream neighbour of Son (DONSON) protein signature 233 245 IPR024861 -
Vvi3g1271 632 PRINTS Downstream neighbour of Son (DONSON) protein signature 337 350 IPR024861 -
Vvi3g1271 632 PRINTS Downstream neighbour of Son (DONSON) protein signature 350 365 IPR024861 -
Vvi3g1271 632 PANTHER DOWNSTREAM NEIGHBOR OF SON 22 631 IPR024861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1271 Vvi-Chr3 18431658 18446124 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1271 K22422 - vvi:100257121 1248.42