Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1266 ATGTGGGTTTCTTCAACAAGGTGGGTTTCTTGTAGAAAATTTATCACCCACGTTCAATTAACCCGATTTAATTCTGTTTGGGGTCTTGCCCATTTGAGCCCTGCCGCGCAATACCCAATTGCTGAAGAACAAGCTGTTTATACCTATAGCAAGGACTCTGTTGGTGATCGTTTTATTGATTTAAATACAAGTAGAGTTGTTGAAATCTTTTATAATTTGAAAAACGAGCCTAATCTCGCATGGTCGTTTTTTACCCAATTGAAAGAAAGCGGTTTTCAGCACAATGTTGATACGTATGCGGCTTTAATCAGAGTACTGTGTCGTTGGCGCTTGGAAAGGAAGTTGCAGTCTTTGTTATCGGAGATTGTTGGGTCAAAAGAGAGTGTATTGGGTTTTGATATTACAGCTTTGTTTGATGTTCTGAGGGAGGGAGGGGGGGAAGTTGAGGGTGAGCATTCGAGTGTGTTGATTCTGGTGCTTGATATGTTGGTTAAGGCTTATGTTAGGGTTGGTATGTTTGATGAGGCCATTGATGCTCTGTTTCAAACAAAAAGACGAGGGTTTGTTCCTCATATAATGTCTTGCAATTTTTTGATGAATCGTTTGATTGAACATGGGAAGATTGATATGGCAGTGGCGATTTATCGGCATTTGAAGAGGTTGGGTTTGAACCCAAATGATTATACTTATGGCATTTTCATAAAGGCACTTTGTAGGAAGGGTAATTTTGAAGAAGCTGTTGATGTGTTTAGGGAGATGGAAGAAGCTGGAGTGAACCCTAATGCTGTCACATGCAGTACATATATTGAAGGGCTTTGTTCCCATAAGAGGTCGGATTTGGGTTATGAAGCCCTCCGAGCATTAAGAGCAGCAAATTGGCCAATTGATACCTTTGCTTATACAGCAGTTATTCGTGGGTTTTGTAGTGAGATGAAATTAAAAGAAGCAGAGGACGTCTTCATTGATATGGTAAATGAAGGGATAGCCCCTGATGGGTATATCTATGGTGCCTTAATTCATGCTTATTGCAAGGCTGGGAATTTGCTACAAGCTGTGGCTCTGCACAATGATATGGTGTCAAATGGAATTAAAACAAATTGTGTCATAGTTAGCTCAATTCTTCAATGCCTGTGTGAAATGGGCATGGCTTCTGAAGTGGTGGATCAATTTAAGGAGTTCAGGGACTCAGGGATTTTCCTTGATGAGGTTTTGTACAATATTGTGGTGGATGCTCTTTGTAAACTGGGGAAAGTGGAAGAAGCTGTGGAATTGCTGAATGAAATGAAGGGTAGGCGCATGTCTCTGGATGTCGTGCATTATACAACTTTGATTGCTGGGTATTGTCTCCAAGGTAAACTTGTTGATGCTAAGAATATGTTTGAAGAAATGAAGGAAAGGGGCATTGAACCTGATATTGTTACCTATAACATACTAGTTGGTGGGTTTTCTAGAAATGGTCTCAAAAAAGAGGCACTTGAGCTTCTCGATTGCATTGGGACACAAGGCCTGAAACCCAATTCTGCCACACACAACAGGATCATTGAAGGTTTATGTATGGCAGGGAAAGTGAAGGAAGCTGAAGCATTTTTAAATACCTTGGAGGATAAGTGTTTGGAAAATTATAGTGCCATGGTTGATGGGTACTGCAAAGCAAACTTTACAAGAAAGGCATATGAACTATTTTCTAGGCTTTCTAAGCAGGGAATTTTAGTTAAGAAAAAATCATGCTTCAAACTACTAAGTAGCCTCTGTATGGAAGGGGAGTATGACAAAGCTCTTATATTGTTAGAGAGAATGTTGGCTTTGGATGTGGAGCCTAACCAAATTATGTATGGTAAACTCATAGGTGCCTTTTGTCGGGATGGAGATATGAAAAGGGCTCAATTGGTGTTTGATATGTTGGTTGAGAGAGGAATAACTCCTGATGTCATCACCTACACAATGATGATAAATGGTTATTGCAGGGTGAACTGCTTGCGAGAAGCCCGTGATATTTTCAATGATATGAAGGAGAGAGGAATTAAACCTGATGTTATCACTTACACAGTTGTGCTTGATGGTCATTCGAAGGTAAATTTGAAAATGGCTCGTTCCCTTCAATTTTCAAAGGGGAGCGAAGAAGAAAAAATGGATGCTTCACCTTTTTGGAGTGAAATGAAGGAAATGGGAATAAAACCTGATGTTGTTTGTTACACTGTTTTGATCGATAGTCATTGCAAGACAAACAACCTTCAGGATGCTATTAACCTGTATGATGAAATGATTGCTAGAGGACTACAACCTGATATTGTGACATACACAGCTCTTCTGTCCAGCTGTTGCAGTAGGGGTGATATGGATAGGGCTATAACCCTTGTTAATGAGATGTCATTTAAAGGGATAGAACCAGATAGCCGAGCCATGTCAGTGCTGCACCGTGGTATTTTAAAGGCCCGGAAAGTGCAATTTCGGTAG 2454 0.403 MWVSSTRWVSCRKFITHVQLTRFNSVWGLAHLSPAAQYPIAEEQAVYTYSKDSVGDRFIDLNTSRVVEIFYNLKNEPNLAWSFFTQLKESGFQHNVDTYAALIRVLCRWRLERKLQSLLSEIVGSKESVLGFDITALFDVLREGGGEVEGEHSSVLILVLDMLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNCVIVSSILQCLCEMGMASEVVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCLENYSAMVDGYCKANFTRKAYELFSRLSKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSKVNLKMARSLQFSKGSEEEKMDASPFWSEMKEMGIKPDVVCYTVLIDSHCKTNNLQDAINLYDEMIARGLQPDIVTYTALLSSCCSRGDMDRAITLVNEMSFKGIEPDSRAMSVLHRGILKARKVQFR* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1266 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Vvi3g1266 817 Gene3D Tetratricopeptide repeat domain 539 619 IPR011990 GO:0005515
Vvi3g1266 817 Gene3D Tetratricopeptide repeat domain 431 538 IPR011990 GO:0005515
Vvi3g1266 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Vvi3g1266 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 537 571 IPR002885 -
Vvi3g1266 817 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 327 599 - -
Vvi3g1266 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Vvi3g1266 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 642 676 IPR002885 -
Vvi3g1266 817 Gene3D Tetratricopeptide repeat domain 628 698 IPR011990 GO:0005515
Vvi3g1266 817 Gene3D Tetratricopeptide repeat domain 45 218 IPR011990 GO:0005515
Vvi3g1266 817 Gene3D Tetratricopeptide repeat domain 219 289 IPR011990 GO:0005515
Vvi3g1266 817 Gene3D Tetratricopeptide repeat domain 290 359 IPR011990 GO:0005515
Vvi3g1266 817 Gene3D Tetratricopeptide repeat domain 360 430 IPR011990 GO:0005515
Vvi3g1266 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 727 761 IPR002885 -
Vvi3g1266 817 SUPERFAMILY HCP-like 166 640 - -
Vvi3g1266 817 NCBIfam pentatricopeptide repeat 403 436 IPR002885 -
Vvi3g1266 817 NCBIfam pentatricopeptide repeat 333 366 IPR002885 -
Vvi3g1266 817 NCBIfam pentatricopeptide repeat 228 262 IPR002885 -
Vvi3g1266 817 NCBIfam pentatricopeptide repeat 644 678 IPR002885 -
Vvi3g1266 817 NCBIfam pentatricopeptide repeat 439 472 IPR002885 -
Vvi3g1266 817 NCBIfam pentatricopeptide repeat 764 798 IPR002885 -
Vvi3g1266 817 NCBIfam pentatricopeptide repeat 610 643 IPR002885 -
Vvi3g1266 817 NCBIfam pentatricopeptide repeat 162 190 IPR002885 -
Vvi3g1266 817 NCBIfam pentatricopeptide repeat 299 331 IPR002885 -
Vvi3g1266 817 NCBIfam pentatricopeptide repeat 541 569 IPR002885 -
Vvi3g1266 817 NCBIfam pentatricopeptide repeat 729 763 IPR002885 -
Vvi3g1266 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Vvi3g1266 817 Gene3D Tetratricopeptide repeat domain 699 816 IPR011990 GO:0005515
Vvi3g1266 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Vvi3g1266 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 607 641 IPR002885 -
Vvi3g1266 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Vvi3g1266 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Vvi3g1266 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Vvi3g1266 817 Pfam PPR repeat 579 601 IPR002885 -
Vvi3g1266 817 Pfam PPR repeat 541 569 IPR002885 -
Vvi3g1266 817 Pfam PPR repeat 610 639 IPR002885 -
Vvi3g1266 817 Pfam PPR repeat 163 188 IPR002885 -
Vvi3g1266 817 Pfam Pentacotripeptide-repeat region of PRORP 277 395 IPR033443 -
Vvi3g1266 817 Pfam PPR repeat family 190 239 IPR002885 -
Vvi3g1266 817 Pfam PPR repeat family 641 689 IPR002885 -
Vvi3g1266 817 Pfam PPR repeat family 436 483 IPR002885 -
Vvi3g1266 817 Pfam PPR repeat family 726 775 IPR002885 -
Vvi3g1266 817 Pfam PPR repeat 502 531 IPR002885 -
Vvi3g1266 817 Pfam PPR repeat 397 429 IPR002885 -
Vvi3g1266 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Vvi3g1266 817 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 762 796 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1266 Vvi-Chr3 18336898 18339351 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1266 390 813 Glycosyltransferase AT1G05670 27.646 3.83e-58 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1266 - - vvi:100243250 1625.14