Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1260 ATGTCTGCTGATCATTTGCAGTTCTTGAAGAACAGGTTCATTCTGGACTTGGAAGACGCGGAGGAGGAACACTCCGGGGAAAATGAGATCCCCCTTCTCGCTCATTTTCTACAGATTAGAGATGCGTTGAAAGCAAAGGACATCACGGCATCTACACCCATCAGATTGAAGAATTGTCTATACAACGCCATCAGCGCATTAGAAGAGTGCGTGGTGTTGTCGGAGAAGCGTGAACCCCGAAAGAAGAAGGATGGTCCGATGCATGGATACACTCTGGCGGAGCATTGGATTTTGTGCAAAACCAGAAAGTTGTTGGTTCAAGTAAAGAGAAAGCTTACTGCTCCGGCTGATCCCATTATTCCTGGTATGACCGACATGGCCGCAAGTTCATCCTCCACCTCCTTACAAGTTATTCCAAGACCAAACTCCAGGAATTTTCATCCTTGGAGGTGTCGAGGTTTTGATGAACAAATAACCACAATTTTAGATCGACTTGAGAATACAGGGGATGGGTTTCAGGAAATCGGAATCGTGGGGATTGGGGGCTCGGGTAAAACCGCTCTGGTCCAATTGGTTTTTACCCAATCCGATGAGAGGTATTTCCGGGATTACAGAATTTGGATATGCTTATTCCGGAAACTGAGTGGAAATGTAAGGTTTAAGAAGATGATAAAGGACATGTTGAGGCAGTGTAAGGCAGTGGGGGATTATGAAGATTTTGATGAAGAAGAGGATGATGAAGACAACGATGGGGTAGAAGTGGAAGACCTGTTGGAGAATCTTGGGAAAGCTTTGAAGGGTAAAAGGTATTTGATGGTGTTGGACGGCATCTGGGACATCAACATCCACTGGTATTTCAAGTTAAAGGAAAAGTTGAAGTCTCTACCTGGTGATGGTGATGGGCACGTCATCATCACCAGCCGACTATCCCACAAAGCAAGAATGATGGTGGGCCCTCACAATCTGTATCACATACAGCCTCCATTAAATTCCATGAAGGACATGTGGCAATTCAATGAAATATTGGGTAGGCTTAAAAGGTATAAGTTGAAATTGAAGGATGAGGTTATAGAGCAATGTGATGGCCTCCCATTAGCAATGTACACTATGCGAGCTGTGATTTTCGACCAGATCCTGCGAGCAAGGTAA 1149 0.4482 MSADHLQFLKNRFILDLEDAEEEHSGENEIPLLAHFLQIRDALKAKDITASTPIRLKNCLYNAISALEECVVLSEKREPRKKKDGPMHGYTLAEHWILCKTRKLLVQVKRKLTAPADPIIPGMTDMAASSSSTSLQVIPRPNSRNFHPWRCRGFDEQITTILDRLENTGDGFQEIGIVGIGGSGKTALVQLVFTQSDERYFRDYRIWICLFRKLSGNVRFKKMIKDMLRQCKAVGDYEDFDEEEDDEDNDGVEVEDLLENLGKALKGKRYLMVLDGIWDINIHWYFKLKEKLKSLPGDGDGHVIITSRLSHKARMMVGPHNLYHIQPPLNSMKDMWQFNEILGRLKRYKLKLKDEVIEQCDGLPLAMYTMRAVIFDQILRAR* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1260 382 Pfam NB-ARC domain 157 370 IPR002182 GO:0043531
Vvi3g1260 382 Gene3D - 135 325 IPR027417 -
Vvi3g1260 382 PANTHER DISEASE RESISTANCE PROTEIN RP 110 371 IPR044974 GO:0006952
Vvi3g1260 382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 376 IPR027417 -
Vvi3g1260 382 PRINTS Disease resistance protein signature 360 374 - -
Vvi3g1260 382 PRINTS Disease resistance protein signature 264 278 - -
Vvi3g1260 382 PRINTS Disease resistance protein signature 174 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1260 Vvi-Chr3 18171437 18173096 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1260 - - vvi:104878964 733.791