Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1253 ATGCTGAGAACCAAGCTCTCATCCACCAATCCACCTAGGGTTTTTAGGGTTTTAAGGGTTTTGGGAGTTTCGATTTCCACCTCCACGGTATCCCCCACAACCCCTGCATCCCCGCCGCACAACCACCTCCTCCCTCGCCATAACCCCGTCGTTTTGGGCGGAATCGGCTCTCTTCAAGCCAAAGATGTGGTTCTCTCCTTCAAACAGTGGTTCAAATCCCCCCAAAATATCCTCCTTATGGACCAGATTTTCCGAATCCTCTCCGATCTCCCGCCGGACGATGCCGACGCCGCCCTCGGCCGCCTCCGCCTCCCGCTTTCGGAGCGGTTCGTTCTTGATGTGCTTGCCCATGGCAGTGATGTTTTGTCTTGTCTTAAATTCTTTGATTGGGCTGGAAGGCAACCGGGGTTTCACCATACCCGTGCCACGTTCCATGCCACGTTCAAGATCCTTGCTCGAGCGAAGCTCATGTCGCTCATGCTGGACTTCCTGCAGAATTATACGGAGCTCCGGTATGTGCATAGAGTTAGGTTCTATGATACCCTGGTGATGGGTTATGCGGTTGCGGGCAAGCCGGAGATTGCCCTCCAACTGTTTGCGAAAATGCGGTTTCAGGGTCTTGATTTGGATAGCTTTGCTTATCATGTTTTATTGAATGCGTTGGTGGAGGAGAATTGTTTTGATGCGTTTCGAGTTGTGGTGGAGCAGATTAGGATGAGGGGGCTTGATAACGAGATTACCCATTCAATTATTGTGAAGAATTTTTGCAAGCAGGGGCAGCTGGACGAGGCGAAAGCGTTTGTGGAACAGTTGGTCGAGAGCGGGAGAGTTGGATTGAGTGGTGGGCATATGGTGGGTTTAATTGTGGACGCTCTTTGTAAGAGGAAGAGGTTTGGGGAGGCGGGTAGGCTGGTGGAGGAATTTCAGGGGTCTGGGATGGTTTCCGTGGAGCAGGCTTATGGAGTGTGGATTAGGGATCTTGTTCGGGCTGGGAGGCTTGATGGGGCTCTGGAGTTCTTGCATAGCAAAAAGGAGTCTGAGGGGTATGTGCCTGAGGTATGTGGTTATAACATTTTGATATGTAGGCTTTTGAGGGAGAATCGACTTGAGGAGGTGCTTGATTTATTGATGGAGATGAGGGAGGGTCAGATTTTGCCGGACAAGGTCACAATGAATGCTGTCTTGTGCTTCTTTTGTAAGGCTGGAATGGTGGATGTTGCTCTTGAGTTGTATAATTCAAGGGCAGAGTTTGGACTCTCTCCGAATAGCATGGCCTACAACTATCTGATTAACACTCTCTGTGGGGATGGGAGCACTGATGAAGCATATCACGTGTTAAAGCATTCTCTTGAGCAAGGTTATTTCCCAGGCAAGAAGACCTTTTCCATTCTTGCTGACGCTTTGTGCCAAGAGGGGAAGCTGGACAAGATGAAGGAGTTGGTCCTTGTTGCCTTGGATCGCAATATTATGCCAAGTGCTTCCACCTATGACAAATTTATATTAGCTCTTTGTAAAGCGAGGAGGGTAGATGATGGTTATTTGATACAGGGGGAACTCAACAAAATAAATAAGGTTGCTAGCAAAAATACTTACTTTAATATGATACGTGGGTTTAACATTTTAAATAGGGCAGATATTGCTGCCAGACTTCTTATTGAATTGCAAGAAAAAGGTCATACCCCTACAAGGTCTTTGTTCAGAGCTGTTATTTGTCGTCTTTGTGATATGGATAATGCAGAAAAGCAGTTTCTCAAACTGCTAGAGTTGCAGTTGTCTCACCAGGAGCCTAACTGTCAGGTTTACAACTTCTTCATTGATGGAGCTGGGCATGCCAAAAAACCTGAGCTTGCTCGAGAAGTGTTTGAGATGATGGTAAGAAGTGGAATTGTGCCAAATTTGAGTTCTGACATTCTGATGTTGCAGAGTTACCTAAAGAATGAAAGAATCTCCGATGCTCTAAATTTCTTTAGTGACTTGCAAAAAAGGAGGAAGGTAGGGAGGAAACTATGCAACACCATGGTCGTTGGCCTTTGCAAAGCCAACAAGGTGGATATTGCATTGGAAATCCTGAAGGAAATTAGGGAAAAAGGAGTAACTCCAAGTCTTGAATGTTATGAGGAGCTTGTGAAGGTACTTTGCACGAATAAAAGATACGATGTGGTGGTAAATCTTATTGATGACTTAGAGAGAGTTGGGCGGCATGTTTCATCCTTTATTGGTAATGTACTTTTGTTGCATTCTTTGAAGACTCCGGAGCTTTTTGAGACTTGGGTGCATGCTAAAGATGCGCACAATGAGATTTCTTCTCCTAATTTGATTCTTGGCCAGCTAATTGGTGAATTTTCTGGTTGTATTGGAGTGAACCAAGATTTTAATTACTTGGAAGAGGTTATGCAACAGTGCTTTCCACTTGACCTCTACACTTACAATATGTTGTTGAGAAGACTTACTAGGAGCGACATGGACCTTGCATTGGAATTGTTTAATAGGATATGCCAGAAAGGGTATGAACCCAATAGATGGACTTATGATATCTTAGTACATGGTCTGTTTAAGCATGGTAGGACATCTGAGGCCAATAAATGGGTGGAGGAGATGTTCTGCAAAGGGTTTGAGCCAACGGAGGCTACCAAACTTCTCATTTAA 2646 0.4543 MLRTKLSSTNPPRVFRVLRVLGVSISTSTVSPTTPASPPHNHLLPRHNPVVLGGIGSLQAKDVVLSFKQWFKSPQNILLMDQIFRILSDLPPDDADAALGRLRLPLSERFVLDVLAHGSDVLSCLKFFDWAGRQPGFHHTRATFHATFKILARAKLMSLMLDFLQNYTELRYVHRVRFYDTLVMGYAVAGKPEIALQLFAKMRFQGLDLDSFAYHVLLNALVEENCFDAFRVVVEQIRMRGLDNEITHSIIVKNFCKQGQLDEAKAFVEQLVESGRVGLSGGHMVGLIVDALCKRKRFGEAGRLVEEFQGSGMVSVEQAYGVWIRDLVRAGRLDGALEFLHSKKESEGYVPEVCGYNILICRLLRENRLEEVLDLLMEMREGQILPDKVTMNAVLCFFCKAGMVDVALELYNSRAEFGLSPNSMAYNYLINTLCGDGSTDEAYHVLKHSLEQGYFPGKKTFSILADALCQEGKLDKMKELVLVALDRNIMPSASTYDKFILALCKARRVDDGYLIQGELNKINKVASKNTYFNMIRGFNILNRADIAARLLIELQEKGHTPTRSLFRAVICRLCDMDNAEKQFLKLLELQLSHQEPNCQVYNFFIDGAGHAKKPELAREVFEMMVRSGIVPNLSSDILMLQSYLKNERISDALNFFSDLQKRRKVGRKLCNTMVVGLCKANKVDIALEILKEIREKGVTPSLECYEELVKVLCTNKRYDVVVNLIDDLERVGRHVSSFIGNVLLLHSLKTPELFETWVHAKDAHNEISSPNLILGQLIGEFSGCIGVNQDFNYLEEVMQQCFPLDLYTYNMLLRRLTRSDMDLALELFNRICQKGYEPNRWTYDILVHGLFKHGRTSEANKWVEEMFCKGFEPTEATKLLI* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1253 881 Gene3D Tetratricopeptide repeat domain 529 665 IPR011990 GO:0005515
Vvi3g1253 881 Gene3D Tetratricopeptide repeat domain 242 344 IPR011990 GO:0005515
Vvi3g1253 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Vvi3g1253 881 Gene3D Tetratricopeptide repeat domain 666 733 IPR011990 GO:0005515
Vvi3g1253 881 Gene3D Tetratricopeptide repeat domain 97 240 IPR011990 GO:0005515
Vvi3g1253 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Vvi3g1253 881 Gene3D Tetratricopeptide repeat domain 749 880 IPR011990 GO:0005515
Vvi3g1253 881 Pfam PPR repeat family 386 434 IPR002885 -
Vvi3g1253 881 Pfam PPR repeat family 805 852 IPR002885 -
Vvi3g1253 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 805 838 IPR002885 -
Vvi3g1253 881 SUPERFAMILY HCP-like 401 627 - -
Vvi3g1253 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Vvi3g1253 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Vvi3g1253 881 Pfam PPR repeat 670 698 IPR002885 -
Vvi3g1253 881 Pfam PPR repeat 247 275 IPR002885 -
Vvi3g1253 881 Pfam PPR repeat 356 381 IPR002885 -
Vvi3g1253 881 Pfam PPR repeat 179 206 IPR002885 -
Vvi3g1253 881 Pfam PPR repeat 460 481 IPR002885 -
Vvi3g1253 881 Pfam PPR repeat 600 629 IPR002885 -
Vvi3g1253 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Vvi3g1253 881 NCBIfam pentatricopeptide repeat 842 875 IPR002885 -
Vvi3g1253 881 NCBIfam pentatricopeptide repeat 356 387 IPR002885 -
Vvi3g1253 881 NCBIfam pentatricopeptide repeat 389 422 IPR002885 -
Vvi3g1253 881 NCBIfam pentatricopeptide repeat 669 701 IPR002885 -
Vvi3g1253 881 NCBIfam pentatricopeptide repeat 246 275 IPR002885 -
Vvi3g1253 881 NCBIfam pentatricopeptide repeat 600 632 IPR002885 -
Vvi3g1253 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 839 873 IPR002885 -
Vvi3g1253 881 Gene3D Tetratricopeptide repeat domain 345 486 IPR011990 GO:0005515
Vvi3g1253 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 666 700 IPR002885 -
Vvi3g1253 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 597 631 IPR002885 -
Vvi3g1253 881 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 669 877 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1253 406 877 Glycosyltransferase AT1G05670 23.651 4.37e-29 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1253 - - vvi:100246847 1692.94