Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1252 ATGCCAAGCAAAGTGGAATTAACACCTTTGTGTGAATGTGCAGTCTGCATTGAGAAAGATAGAAAGATGAACAAGGACAAAATATTTAAGCTAGCAAAAGGATTCAGGGGGAGGGCGAAGAACTGCATAAGGATAGCGAGAGAGAGGGTGGAGAAGGCATTGCAGTATTCTTACAGAGATCGAAGAACCAAAAAAAGGGACATGCGCTCTCTTTGGATCGAAAGGATTAATGCTGGCTCCCGCCTGCACGGAGTTAATTACAATAACTTTATACATGGGTTGATGAAGGAGAACATCCAGCTGAACAGGAAAGTTCTCTCAGAGCTGTCTATGCATGAACCTTACACCTTCAAAGCCCTGGTGGATATCTCACAGAATGCCTTCCCTGGAAATAAGAAAGCGGTGCTTCCTCCCAGAAAGGAAGGCATTTCAGTTGTTCTGTAA 444 0.4392 MPSKVELTPLCECAVCIEKDRKMNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRTKKRDMRSLWIERINAGSRLHGVNYNNFIHGLMKENIQLNRKVLSELSMHEPYTFKALVDISQNAFPGNKKAVLPPRKEGISVVL* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1252 147 NCBIfam 50S ribosomal protein L20 20 123 IPR005813 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi3g1252 147 Gene3D - 18 66 - -
Vvi3g1252 147 PRINTS Ribosomal protein L20 signature 23 52 IPR005813 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi3g1252 147 PRINTS Ribosomal protein L20 signature 86 112 IPR005813 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi3g1252 147 PRINTS Ribosomal protein L20 signature 53 82 IPR005813 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi3g1252 147 Gene3D Ribosomal protein L20 67 128 IPR035566 -
Vvi3g1252 147 PANTHER 39S RIBOSOMAL PROTEIN L20 15 142 IPR005813 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi3g1252 147 Hamap 50S ribosomal protein L20 [rplT]. 3 126 IPR005813 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi3g1252 147 SUPERFAMILY Ribosomal protein L20 20 127 IPR035566 -
Vvi3g1252 147 CDD Ribosomal_L20 20 122 IPR005813 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi3g1252 147 FunFam 50S ribosomal protein L20 67 129 - -
Vvi3g1252 147 Pfam Ribosomal protein L20 20 120 IPR005813 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1252 K02887 - vvi:100263906 252.677