Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1250 ATGAATTGGACTAAATGCTCTTGCTTCTTTCTACTCTTGCTGGCAAAAGAATTCTCCATTATGCTATTATTCCCATTAGGTGCTACTCAAGATTTACATGACAAGCAAAATGGTCATTGGAGTGGAGACGGTGATAAACAAGTGGTTGTTGCAATCACTGTATTCTGCTTGTTAGTCGTTGCCTTCTATGCTTTCTTTGCCCCTTTTGTTGGAGGCCGCATCTGGGAGTACGCATTGATCGGCACTTACTCTCCGGTGGCACTCCTTGTTTTCATTCTTTATGTTCGGTGCACTGCAATCAACCCGGCAGATCCTGGCATTTTGTCCAAATTTGATAATCAAGCAATTGATAAACCCAACTCAAAGCATGGATTATCAGCCAAGGACTTGCCCACAAAATTTGATGAAATTGGGAATGGGCCACAGTCTTCTCCATCATCAGCTTCTAGAAGTTCTATAGCAGCAGCTAACTCTAGCAGGAAAGGTTCAGTGGGTGAAGTTGGGAAGGTAGATATTCCTGTGAAATCTCCAAGTAGGAAATCATCTTGTTGTAATTTTGGAGGAATTTTCTGCGCATTGTTTGTACATAAAGATTGCCGCAAACAAGAAGGTACAGCTGAGCAACAGGGCGCAGGTGAAGATGCTTTATTCTGCACATTGTGCAATGCTGAGGTACGCAAATTCAGCAAACACTGTAGAAGTTGTGACAAATGTGTGGATGGATTTGATCACCATTGTCGGTGGCTTAACAATTGTGTGGGGAGGAAAAATTATGTAACTTTTATCTCCCTTATGGCCATCAGTCTCATTTGGCTTGTTATCGAAGTTGGAGTTGGTATTGCTGTCCTAGTGCGTTGCTTTGTTAATAAGAAAGGCATGGAGACTGAAATCATTGATAGACTTGGAAATGGTTTCTCCCGTGCTCCATTTGCAACTGTTGTGGTCATATGTTCTGCAGTTTCATTGCTGGCTTGTGTACCTTTGGGTGAACTTTTCTTTTTCCACATAATACTGATTAGAAAGGGTATTACAACGTATGAGTATGTTGTGGCGATGAGGGCCATGAGTGAGGCACCAGCAGGAGCATCTGTTGATGAAGAATTGCCGAATGTGCTATACTCACCATCAGGATCAGCGACAACTGGCTTGAGTGGTGGAAGTTCCCTGGGACTGCAATACAAGGGGGCATGGTGTACCCCTCCGAGAGTCTTTGTTGATTATCAGGATGAAGTTATACCTCACTTGGATCCTGGAATGGTCCCATCTACTGTGGATCCAGATGCAGCTGGATTTGCAGAAAGAGGGAACAAGGTTCCTAAAAGGCCAGTCCGGATCAGTGCTTGGAGGCTTGCAAAGTTAGATTCAAATGAGGCCGTGAGAGCAGCAGCCAAAGCGAGGGCATCCTCTTCCGTTCTCCGGCCAGTTGACAACCGCCATGTAGCAGATCCTGAATTGAGTTCCAGTGGGAACATAAGTGTCACAAGCAGTTTGAGCACAGACATGGGGGCAAATAAGGAACTCAAGAATGATCTGAGACTTTCTCCCATCAGAAACTCTCTTGCTCCTAGTCAAGGTAGTCGGGATGAATATGAGACTGGGACTCAAAGTGTTAGTAGCTTCAGCAGTCCTAGCCATGTTCATGAATCGGTCACACTAAGCCCTCTCCCACAAGCTCATGGTGTGGGTCACTTTACTGCAGCTACCTCAGCTCCTACCTTTGTTCATGATCGACCATTTACTTCTAGAGCAGTATTTCCTAATATCAGCCACCAGTCGACCCATCCTTCTACTGGATTTGAAGAAAAAATCATCCAAAAAGGAGGCAGTACTGATCCCTTATTGCTTTCTGCTCCAGCTGCTTCTCTACTTAGAGATGTGAAAAGGACATCAGTGGTGTGGGACCAAGAAGCCGGAAGATATGTATCAGTCCCTGTATCAGCTTCAGAAGCTCGAAACAGATCAACCATACAAATAGGAATATCAAACCCTACCACAGAAATGGGTGGCTATGGTAGAAGACCTGTTGTTCCACCTCAAGAATCTACATCATCTGCGTTAAAGGCTCCAGCTCAGCAATCTGAGAAGCTGATGTATACAGGAGAGTCTATCTTCTTTGGTGGCCCGCGGTTGATTGTCCCGGTTAGGGATGGTTTGAGAAATGAGAGGGGTTCAGGGCCAAGAGAGGGCCAAGAGAGGGTGGCACTGAACTTGCCCAGGGAGTCAAGATTCAAGAGGGATTCAGCCTCAAACCAGCTTCCTGTGTTCATCCCTGGGGGTTTCGAGCAGAAGCCTCCATCTGGGTTGGGTTTAAAGTAG 2316 0.4551 MNWTKCSCFFLLLLAKEFSIMLLFPLGATQDLHDKQNGHWSGDGDKQVVVAITVFCLLVVAFYAFFAPFVGGRIWEYALIGTYSPVALLVFILYVRCTAINPADPGILSKFDNQAIDKPNSKHGLSAKDLPTKFDEIGNGPQSSPSSASRSSIAAANSSRKGSVGEVGKVDIPVKSPSRKSSCCNFGGIFCALFVHKDCRKQEGTAEQQGAGEDALFCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYVTFISLMAISLIWLVIEVGVGIAVLVRCFVNKKGMETEIIDRLGNGFSRAPFATVVVICSAVSLLACVPLGELFFFHIILIRKGITTYEYVVAMRAMSEAPAGASVDEELPNVLYSPSGSATTGLSGGSSLGLQYKGAWCTPPRVFVDYQDEVIPHLDPGMVPSTVDPDAAGFAERGNKVPKRPVRISAWRLAKLDSNEAVRAAAKARASSSVLRPVDNRHVADPELSSSGNISVTSSLSTDMGANKELKNDLRLSPIRNSLAPSQGSRDEYETGTQSVSSFSSPSHVHESVTLSPLPQAHGVGHFTAATSAPTFVHDRPFTSRAVFPNISHQSTHPSTGFEEKIIQKGGSTDPLLLSAPAASLLRDVKRTSVVWDQEAGRYVSVPVSASEARNRSTIQIGISNPTTEMGGYGRRPVVPPQESTSSALKAPAQQSEKLMYTGESIFFGGPRLIVPVRDGLRNERGSGPREGQERVALNLPRESRFKRDSASNQLPVFIPGGFEQKPPSGLGLK* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1250 771 MobiDBLite consensus disorder prediction 137 159 - -
Vvi3g1250 771 Pfam DHHC palmitoyltransferase 215 350 IPR001594 GO:0016409
Vvi3g1250 771 MobiDBLite consensus disorder prediction 465 550 - -
Vvi3g1250 771 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 55 353 - -
Vvi3g1250 771 ProSiteProfiles DHHC domain profile. 216 266 - -
Vvi3g1250 771 MobiDBLite consensus disorder prediction 717 771 - -
Vvi3g1250 771 MobiDBLite consensus disorder prediction 483 503 - -
Vvi3g1250 771 MobiDBLite consensus disorder prediction 516 550 - -
Vvi3g1250 771 MobiDBLite consensus disorder prediction 720 746 - -
Vvi3g1250 771 MobiDBLite consensus disorder prediction 136 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1250 Vvi-Chr3 17935635 17941999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1250 198 258 Lipid Metabolism Gene Families AT4G22750 37.143 1.87e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1250 K20027 - vvi:100253600 1384.78