Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1249 ATGATTTTTAGAAACCTCGTTAGATCCACTCTCAGGAACACTCAGGCTGTTTCATACAAAAATCATGTTGCGGCTGCTAGAAGTTTGCAGGAGCATCTGGTTCGGGCTCCCGTGCTGGCCAGATGGAACAGCACAGAGGCATCCATGCAAAGGGAAGATGCAGAAACCGAGTTGAAGAATGCTAAAGAGTTCAAGGGCCATGATATGTTGGCACCTTTCACAGCCGGGTGGCAGGCTTCTGATACAAATCCTCTAGTAATAGAGAAGTCTAAGGGTGCCTATGTCTGGGACATCAATGGAAAGAAGTATCTCGATTCTCTGGCTGGTCTATGGTGCACAGCTTTAGGGGGGAGTGAACCTCGACTTGTTGCTGCTGCAATTGCTCAACTAAATACCTTGCCGTTTTACCACTCCTTTTGGAATCGTACTACAAAACCCTCTCTGGATCTTGCAAAGGAACTTCTAAACACTTTTACAGCAACAAAAATGGGAAAAGCATTTTTTACAAATAGTGGATCAGAAGCCAATGATACCCAGGTGAAGTTGGTATGGTATTATAATAATGCACTTGGAAGACCAAATAAGAAGAAATTCATAGCTCGGGAAAAATCGTACCATGGATCAACCCTAATATCAGCTAGTCTTTCAGGACTTCCAGCATTGCATCAAAAATTTGATCTGCCTGCTCCATTTGTACTACACACTGATTGTCCTCATTACTGGCGCTATCATCTTCCAGGTGAGTCAGAAGAGGAGTTCTCAACCAGATTAGCCAATAATTTAGAGAATCTTATCCTGAAAGAGGGACCAGAGACGATTGCCGCATTCATTGCAGAGCCTGTCATGGGAGCAGGAGGTGTGATTCCTCCACCTGCAACTTATTTTGATAAGATCCAACCTATCTTGAAAAAATATGATATTCTCTTTATTGCGGATGAGGTAATTTGTGCATTTGGAAGGCTTGGAACAATGTTTGGATGTGACAAATATGGCATGAAACCAGACCTTGTCTCCATGGCAAAGGCTCTGTCTTCTGCATATATGCCAATTGGAGCCGTTCTTGTGAGCCCTGAAATTTCAGATGTTATAGACTCTCAAAGCAACAAACTTGGTGTTTTTTCTCATGGATTTACCTATTCCGGGCACCCTGTCTCCTGTGCAGTTGCATTGGAAGCCCTCAAAATCTACAAGGAAAGAAACATTGCTGAGGTAGTACAGAGAATTTCCCCAAAGTTTCAAAATGGGCTAAAAGCCTTCTCCGACAGTCCCATTATTGGAGAGATACGAGGAACTGGCTTGATTCTCGGTACTGAGTTCACAGACAATAAGTCACCTAATGATGTGTTCCCTCCTGAATGGGGCAAGTTCCACCTTTCTTTTGCTTTTATTTTTTGTTATAGTTGA 1404 0.4295 MIFRNLVRSTLRNTQAVSYKNHVAAARSLQEHLVRAPVLARWNSTEASMQREDAETELKNAKEFKGHDMLAPFTAGWQASDTNPLVIEKSKGAYVWDINGKKYLDSLAGLWCTALGGSEPRLVAAAIAQLNTLPFYHSFWNRTTKPSLDLAKELLNTFTATKMGKAFFTNSGSEANDTQVKLVWYYNNALGRPNKKKFIAREKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRYHLPGESEEEFSTRLANNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFDKIQPILKKYDILFIADEVICAFGRLGTMFGCDKYGMKPDLVSMAKALSSAYMPIGAVLVSPEISDVIDSQSNKLGVFSHGFTYSGHPVSCAVALEALKIYKERNIAEVVQRISPKFQNGLKAFSDSPIIGEIRGTGLILGTEFTDNKSPNDVFPPEWGKFHLSFAFIFCYS* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1249 467 Gene3D Aspartate Aminotransferase, domain 1 69 452 IPR015422 GO:0003824
Vvi3g1249 467 CDD OAT_like 84 447 IPR005814 GO:0008483|GO:0030170
Vvi3g1249 467 FunFam Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, probable 119 399 - -
Vvi3g1249 467 SUPERFAMILY PLP-dependent transferases 77 449 IPR015424 -
Vvi3g1249 467 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 45 445 - -
Vvi3g1249 467 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 309 346 IPR005814 GO:0008483|GO:0030170
Vvi3g1249 467 Gene3D - 122 401 IPR015421 GO:0003824
Vvi3g1249 467 Pfam Aminotransferase class-III 82 445 IPR005814 GO:0008483|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1249 Vvi-Chr3 17920535 17927882 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1249 K16871 - vvi:100248495 920.998