Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1247 ATGGGTTGGGCACACTGGACATGGTTGTTGTGTATGTTCCGGCTGGGTGTCGCGTGGAAATGCCCCTTCATATCGTGTATTAGTCCGTTGAGGGTGGGGATATCGGGTTTAAGAAGTTACCTGTGTCAAATCCAAGGGTTTTTGTGTTGGTGGAGGAGGGAGGGGAAATTGGTGAGATCGAGGAGTTTGTGGGTGGAGGTGAGAACAAGTGTTATTGGGCTAATGCAGTTACTGAGCAAAAACATGAGAATGGCTTCACTTAGACTGCCTGATTCAATTCCTTCTCCAGCCCAAGATAGTGAGAGACTTAATCTAGCTTTACAAGGGAGAGGAGTGGATGAACAAGTGATAGTATGGATATTGGGACACAGGAATGCAATCCAAAGGAAGCAGATCAAAGACACTTACCAACAGCTTTATAAAGAGTCCATCATCCATCGTCTTCAATCTAAACTATCTAGTGGGCTCAAGACAGCAATGATCTTGTGGATGAATGAAGCCCCCGAAAGGGATGCGATATTGGCAAACAAGGCCTTGAAAAGGAAGAGGAAGAAAATAAATCAGTTGCAGGTATTGGTAGAGATAGCATGTGCATCATCCCCGGACCATCTAATGGCAGTGAGGCAGGCCTACTGCTCTTTATACGAATGCTCTCTGGAAGAAGACATCACATCCAACATCTCAACTTCTCTCCAAAAGCTTCTAGTGGGTCTAGTGAGCTCGTACAGGCATGATAGAGAATTGGTGGACTTTAATCTTGCAAAATCTGAGGCAGATAAGATACATGAAGCCATTGAAAAGAATCAATTAGATCATGATGATGTTGTGTGGATATTGACAACAAGGAATTTCTTTCAACTTAGAGCAACTTTTGTGTGCTACAAGCAAAGTTACGAAGTTGCTATTGATCAGGCCATTAATAGCAGTGGAAATGGTGATTTGGGCTCTATATTGCGAGGAGTAATTTTGTGCATTGTTTCCCCAGAGAAACATTTTGCTGAGGTCATTAAAGCCTCCACTGTTGGGTACTGGACTAAAGATGAAGATTCATTGACAAGAGCAATTGTGACTCGGGCTGAAATTGATATGACGAAGATCAAAGGAGAGTACTTCAAAATGAACAACACCAATCTCGATGATGTAGTTAGACGTGATACATCAGGGGTTTACAAAAGCTTCTTGATGGCCTTAATTGGAGCAAAAATTTGA 1209 0.426 MGWAHWTWLLCMFRLGVAWKCPFISCISPLRVGISGLRSYLCQIQGFLCWWRREGKLVRSRSLWVEVRTSVIGLMQLLSKNMRMASLRLPDSIPSPAQDSERLNLALQGRGVDEQVIVWILGHRNAIQRKQIKDTYQQLYKESIIHRLQSKLSSGLKTAMILWMNEAPERDAILANKALKRKRKKINQLQVLVEIACASSPDHLMAVRQAYCSLYECSLEEDITSNISTSLQKLLVGLVSSYRHDRELVDFNLAKSEADKIHEAIEKNQLDHDDVVWILTTRNFFQLRATFVCYKQSYEVAIDQAINSSGNGDLGSILRGVILCIVSPEKHFAEVIKASTVGYWTKDEDSLTRAIVTRAEIDMTKIKGEYFKMNNTNLDDVVRRDTSGVYKSFLMALIGAKI* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1247 402 Gene3D Annexin 327 400 IPR037104 GO:0005509|GO:0005544
Vvi3g1247 402 SMART annex3 345 397 IPR018502 GO:0005509|GO:0005544
Vvi3g1247 402 SMART annex3 111 163 IPR018502 GO:0005509|GO:0005544
Vvi3g1247 402 SMART annex3 271 321 IPR018502 GO:0005509|GO:0005544
Vvi3g1247 402 SMART annex3 190 238 IPR018502 GO:0005509|GO:0005544
Vvi3g1247 402 FunFam Annexin 84 165 - -
Vvi3g1247 402 Gene3D Annexin 251 326 IPR037104 GO:0005509|GO:0005544
Vvi3g1247 402 FunFam Annexin 252 326 - -
Vvi3g1247 402 Pfam Annexin 175 238 IPR018502 GO:0005509|GO:0005544
Vvi3g1247 402 Pfam Annexin 98 161 IPR018502 GO:0005509|GO:0005544
Vvi3g1247 402 Pfam Annexin 332 397 IPR018502 GO:0005509|GO:0005544
Vvi3g1247 402 Pfam Annexin 257 318 IPR018502 GO:0005509|GO:0005544
Vvi3g1247 402 ProSiteProfiles Annexin repeat profile. 166 240 IPR018502 GO:0005509|GO:0005544
Vvi3g1247 402 Gene3D Annexin 166 239 IPR037104 GO:0005509|GO:0005544
Vvi3g1247 402 FunFam Annexin 327 400 - -
Vvi3g1247 402 ProSiteProfiles Annexin repeat profile. 252 323 IPR018502 GO:0005509|GO:0005544
Vvi3g1247 402 ProSiteProfiles Annexin repeat profile. 327 399 IPR018502 GO:0005509|GO:0005544
Vvi3g1247 402 SUPERFAMILY Annexin 85 399 IPR037104 GO:0005509|GO:0005544
Vvi3g1247 402 Gene3D Annexin 78 165 IPR037104 GO:0005509|GO:0005544
Vvi3g1247 402 FunFam Annexin 166 239 - -
Vvi3g1247 402 PRINTS Annexin family signature 108 130 IPR001464 GO:0005509|GO:0005544
Vvi3g1247 402 PRINTS Annexin family signature 341 361 IPR001464 GO:0005509|GO:0005544
Vvi3g1247 402 PRINTS Annexin family signature 148 164 IPR001464 GO:0005509|GO:0005544
Vvi3g1247 402 PRINTS Annexin family signature 385 398 IPR001464 GO:0005509|GO:0005544
Vvi3g1247 402 ProSiteProfiles Annexin repeat profile. 94 165 IPR018502 GO:0005509|GO:0005544
Vvi3g1247 402 PANTHER ANNEXIN 90 397 - -
Vvi3g1247 402 PRINTS Plant annexin signature 312 330 IPR009118 -
Vvi3g1247 402 PRINTS Plant annexin signature 247 267 IPR009118 -
Vvi3g1247 402 PRINTS Plant annexin signature 205 219 IPR009118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1247 Vvi-Chr3 17907034 17916695 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1247 K17098 - vvi:100243369 622.854