Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1245 ATGAAGCATCTGCATCCAGCACCTGCACTGGCCAAATGTAGTAGTACAGAGACATCACTGCAAAAGGAAGATTCAGCAACTAAGAATGCTAAAGGGTTTAAGGGCCATGATATGTTGTCACCTTTCACAACTGGGTGGCAGAGTACTAATTTGGATCCTCTACTAATAGAGAGGTCTGAGGGTCCCTATGTCTATGACAGCAATGGGAGGAAGTATCTTGATGCACTGGCTGGTCTGTGGTGCACAGCTTTAGGGGGAAGTGAACCACGGCTTATTGCTGCTGCAACTGCTCAACTAAATACCTTGCCATTTTATCATTCCTTTTGGAATCATGCTTCAAAGCCCTCTTTGGATCTTGCTAAGGAACTTCTGAACACTTTTACAGCAACAAAAATGGGAAAAGTCTTCTTTACAAGTAGTGGATCAGAAGCAAATGACACACAGGTGAAGCTGGTTTGGTATTATAACAATGCACTTGGAAGACCAAATAAAAAGAAGTTCATAGCTCTTGAAAAATCGTACCATGGGACGACTTTCATATCAGCTAGTCTTTCTGGACTTCCAGTGTTGCATCAAGGTTTTGATCTGCCTTCTCCATTTGTGTTTCACACTGATTGCCCTCATTACTGGCGCTTTCATCTTCCAGGGGAGACTGAAGAGGAGTTCTCAACCAGATTAGCCAATAATTTGGAGAAGCTTATCCTCAAACAAGGACCAGAAACGATTGCAGCTTTTATTGCAGAGCCTCTCATGGGAGCAGGAGGTGTGATTCCTCCCCCCACAACTTATTATGAGAAGATACAAGCTATTCTGAAAAAATATGACATTCTGTTTATAGCGGATGAGGTAATTTGTGCATTTGGAAGGCTTGGAGCAATGTTTGGATGTGACAAATACGGCATCAAGCCAGACCTTGTCTCCATTGCCAAGGCTTTCTCTTCTGGATATATGCCCATTGGAGCCGTTCTCGTGAGCCCTGAAATTTCAGAAGTTATACACTCCCACAGTAACAAACTTGGTTCTTTTGCTCATGGATTTACTTTTTCCGGGCACCCTGTATCCTGTGCGGTAGCATTGGAAGTACTCAAGATCTACAGGGAAAGAAATATCATTGAGCAAGTCCAGAGCCTCTCCCCAAGATTTCAAGACGGCATAAGAGCCTTCTCTGACAGTCCTATCATTGGAGAAATACGGGGAACTGGCTTGCTTATTGGTATCGAGTTCACAGACAATAAGTCTCCTAATGATTCATTCCCTCCTGAATGGGGCAATCGGCGTTGGGGCATTGCAGGGGTGGGGGCATATTTTGGAGCAGAGTGCAAGAAGCATGGAATGATAGTTCGTTCTGCCGGGAATATTATAGTGTTGTCTCCTCCCCTTATAATCTCCCCAGAAGAAGTTGAGAAGATAATAAGCATATGTGAGAAGGCCCTGAAGGCTACTGAAGAGAGGGTGAAGGAACTCAAGTCTCAGGAGAAGTAG 1482 0.4413 MKHLHPAPALAKCSSTETSLQKEDSATKNAKGFKGHDMLSPFTTGWQSTNLDPLLIERSEGPYVYDSNGRKYLDALAGLWCTALGGSEPRLIAAATAQLNTLPFYHSFWNHASKPSLDLAKELLNTFTATKMGKVFFTSSGSEANDTQVKLVWYYNNALGRPNKKKFIALEKSYHGTTFISASLSGLPVLHQGFDLPSPFVFHTDCPHYWRFHLPGETEEEFSTRLANNLEKLILKQGPETIAAFIAEPLMGAGGVIPPPTTYYEKIQAILKKYDILFIADEVICAFGRLGAMFGCDKYGIKPDLVSIAKAFSSGYMPIGAVLVSPEISEVIHSHSNKLGSFAHGFTFSGHPVSCAVALEVLKIYRERNIIEQVQSLSPRFQDGIRAFSDSPIIGEIRGTGLLIGIEFTDNKSPNDSFPPEWGNRRWGIAGVGAYFGAECKKHGMIVRSAGNIIVLSPPLIISPEEVEKIISICEKALKATEERVKELKSQEK* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1245 493 SUPERFAMILY PLP-dependent transferases 39 479 IPR015424 -
Vvi3g1245 493 Gene3D - 88 370 IPR015421 GO:0003824
Vvi3g1245 493 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 20 479 - -
Vvi3g1245 493 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 278 315 IPR005814 GO:0008483|GO:0030170
Vvi3g1245 493 MobiDBLite consensus disorder prediction 1 32 - -
Vvi3g1245 493 CDD OAT_like 48 478 IPR005814 GO:0008483|GO:0030170
Vvi3g1245 493 Gene3D Aspartate Aminotransferase, domain 1 54 478 IPR015422 GO:0003824
Vvi3g1245 493 MobiDBLite consensus disorder prediction 12 26 - -
Vvi3g1245 493 FunFam Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, probable 88 368 - -
Vvi3g1245 493 Pfam Aminotransferase class-III 53 478 IPR005814 GO:0008483|GO:0030170
Vvi3g1245 493 Coils Coil 471 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1245 Vvi-Chr3 17886484 17891343 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1245 K16871 - vvi:100258633 973.77