Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1243 ATGGCTGGTGGGTTGTTGTGGGCAACAAGGGCCGCTTCATATTTGAGGATCTCAGTGCCCTTCAGAGCCTTTTCTTCTGTTGTTAAGGATTTGAAATATGTTGATTCTCATGAGTGGGCCAAAGTTGACGGAAATTTAGCAACCATAGGGATTACCGACCATGCTCAGGATCATTTAGGTGATGTTGTGTATGTGGAACTGCCTGAAGTTGGAGCCAATGTTTCACAGGGTGGCAGTTTTGGTGCTGTTGAGAGTGTCAAAGCAACCAGCGACATCAACTCCCCTGTTTCGGGCAAAGTGGTTGAAGTCAATGAAGAACTCAGCAGCTCTCCAGGTTTGGTTAACGGGAGCCCGTACGAGAAAGGGTGGATCATAAAGGTAGAGATCAGCAACCCAAGTGAGCTCAACTCCTTGATGGACTCAGAGCAGTACTCCAAGTTCTGTGAAGAAGAAGATGCAAAGCATTGA 468 0.4701 MAGGLLWATRAASYLRISVPFRAFSSVVKDLKYVDSHEWAKVDGNLATIGITDHAQDHLGDVVYVELPEVGANVSQGGSFGAVESVKATSDINSPVSGKVVEVNEELSSSPGLVNGSPYEKGWIIKVEISNPSELNSLMDSEQYSKFCEEEDAKH* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1243 155 CDD GCS_H 33 127 IPR033753 -
Vvi3g1243 155 FunFam Glycine cleavage system H protein 25 151 - -
Vvi3g1243 155 NCBIfam glycine cleavage system protein GcvH 28 152 IPR017453 GO:0005960|GO:0019464
Vvi3g1243 155 Gene3D - 20 151 - -
Vvi3g1243 155 ProSiteProfiles Biotinyl/lipoyl domain profile. 46 128 IPR000089 -
Vvi3g1243 155 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 71 100 IPR003016 -
Vvi3g1243 155 Hamap Glycine cleavage system H protein [gcvH]. 28 149 IPR002930 GO:0005960|GO:0019464
Vvi3g1243 155 Pfam Glycine cleavage H-protein 31 150 IPR033753 -
Vvi3g1243 155 PANTHER GLYCINE CLEAVAGE SYSTEM H PROTEIN 6 153 IPR002930 GO:0005960|GO:0019464
Vvi3g1243 155 SUPERFAMILY Single hybrid motif 27 150 IPR011053 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1243 Vvi-Chr3 17876137 17882229 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1243 K02437 - vvi:100265691 311.227