Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1242 ATGAAGAAGATGGGGGAGCTAGAGAGCGAGCTGCAGGTGTCTGCAGGTGACGCTCGGAAGTTTGAGGAACTGCATAGGGAAAGTGGTTCACATGCAGAAACTGAGACGCAGAGGGCATTGGAGTTTGAGAGGCTGCTTGAAGTGGCAAAACTGAGCGCAAAAGAAATGGAAGATCAGATGGCTCTGCTGCAGGAGGAGCTCAAGGGCCTGTATGAGAAGATAGCCGAGAACCAGAAGGTTGAAGAAGCACTCAAGACCAGTGTTGCAGAGCTCTCTTCAAAGGAAGCCCTGATAAATGAACTGAGACAAGAGCTGGAAGATAAGTCGGCTTCTGAGGCTCAGGCAAAGGAGGATAAATCTGCTCTTGAGGATCTGTTCTCCCAGACAAAGGCTGATCTCGAAGCAAAGGTCTTGGAGTTGCAAGAAGTGAAGCTGAAGCTCCAGGAGGAGGTGACCGTGAGGGAATCTGTTGAGGTCGGGTTGAAAACCCAGGAGGCAGAGGTTGCGAAGACTCAGGAGGAGCTGGCAGAAGTGACAAAAGAAAAGGAGGCATTCGAAGCAGCTGTGGCGGACCTTGCCAGTAATGCAGCAAGAATGCAGGAGTTGTGTGATGATCTTGAGACAAAGCTGAAGCAGTCGGATGAAAATTTCTGCAAGACAGATTCTCTGCTATCTCAAGCTCTGGCAAACAATGCAGAGCTGGAGGAGAAACTCAAATCCCAAGAGGCGCTCCATCAAGAAACAGGTACAATTGCATCAACTGCTACTCAGAAGAGTATTGAGCTTGAAGGTCTGGTCCAAGCTTCCAATGTAGCAGCAGAAGAGGCCAAAGCACAACTTAGAGAGCTTGAGACACGGCTTATAGGAGCAGAACAGAGGAATGTGGAGCTGGAGCAACAACTAAATCTGGTAGAGCTGCAAAGCAGTGAGGCTGAGAGAGAACTCAAGGAATTTTCTGAGAAAATGTCTGAGCTCAGTGTTGCATTGAGAGAGGTTGAGGAAGAGAAGAAAGAGCTGAAGGGTCAAATGCAGGAATATGAGGATAAGATAACTCAGCTGGAGTCTGCCCTGAGTCAGTCATCATTGGAGAAATCTGAGCTTGGGTTGGAGTTGAAGAGCGTCGCAGCAAAATGCACTGAACATGAGGACCGAGCCAATTCAACCCACCAGCGAAGCCTTGAGCTTGAAGATTTGATGCAGTTGTCTCATTCCAAAGTAGAGGATGCTGCAAAAAAGGCGACTGAGTTGGAACTATTACTGGAAACTGAGAAGTATAGAATTCAGGAACTCGAGGAACAGATATCCACATTAGAGAAGAAATGTGGGGATGCAGAAGCAGCATCGAAGAAATACTTGGAGCAGATATCTGACATTGAAGCAGAGCTTCAGATCTCCCGGGCTGAATCCAAAAGCCTGGAAAAAGCACTGGAATTGGCTAGTGAAACAGAGAGGGATATCACTGAACGATTGAATATTTCAATAGAAGTGAAGAAAGGGCTGGAAGAAGCACTGAGTAGCTCCAGTGAGAAGCTTGCGGAAAAAGAAAATCTTCTACAAGTACTGCAAAATGAATTGAGTCTGACACAAGAGAAGTTACAGAGCATTGAAACCGATCTTAAGGCTGCAGGGGTAAAAGAGAGTGAGATAATGGAGAAGCTCAAGTCTGCTGAGGAGCAATTGGAGCAACAAGGGAGAATAATCGAGCAAAGTACTGCTAGAAGCTTAGAGCTTGAAGAACTACACGAAACCCTAAAGAGGGATTCAGAGTTTAAACTAAATGAAGCGATTGCAAGCCTCAGCAGCAGGGATTCTGAGGCACAATCTCTGTACGAGAAACTGAAAAGTCATGAGGATCAAGTAAAGACTTATGAATTGCAGGTGGCTGACACAGCAGAAAAGTCCACCTCTCTGAAGGAAGAATTGGAGCGATGTTTGGGCGAACTGGCTGCTCTGCAAAGCACAAACGAGGAACTGAAAGTAAAGATCTCAGAAGCAGAAAGTAAGGCTGCAGAGTCTGTTTCAGAGAATGAACTGTTAGTAGAGACAAACATAGAACTCAAGAGCAAGGTTGATGAGCTTCAGGAACAGCTAAACTCTGCTTCTGCTGAAAAGGAAGCAACTGCTCACCAGCTTGTTTCTCACAGGAACACGATTGTGGAATTAACAGATCAGCACTCAAGATCCTGTGAACTTCAGTCTGCAACTGAAGAACGAGTCAAGGAAGCAGAGATCCAATTAGAAGAAGCTGTTCAGAGATTCACCCATAGAGATTCAGAGGCTAAAGAGTTGAATGAGAAGTTAACTGCACTTGAAAGCCAAATAAAAGTTTATGAAGAACAAGCTCATGAAGCATCTGCAATTTCTGAAACCCGAAAAGTAGACCTTGAACAGACTCTCCTGAAACTGAAAGATCTGGAAAGCGTTGTTGAGGAATTGCAAACAAAGTTGGGTCATTTTGAAAAAGAGAGTGAAGGACTCGCTGAGGCTAATTTGAAGCTTACTCAGGAACTGGCTGCATATGAATCCAAAATGAACGATTTACAAGAAAAACTTTTAACAGCATTTTCTGAGAAGGACGAAACAGTTGAACAGCTCCAATTTTCAAAGAAAGGAATTGAAGATTTGAGACAGCAGCTTGCTACTGAAGGGCAGAAACTACAATCACAGGTATCTTCAGTAATGGAAGAGAACAACCTACTCAATGAAACCTATCAAGCTGCCAAGAATGAACTTCAGGCTGTGATAATCCAGCTTGAAGGACAACTGAAAGAACAGAAAGCAAATGAAGACGCTATAAAAGCTGAGATGGAAAACCTCAAAGCCGAAATTGCAGACAAATCTGTGTTGCAAACTCGTCTGGATGAGCTTGAAAAACAATTGGTCTTAGCTGAGGCTCGACTGAAAGAAGAGGTTGAAACTGTCCAGGCAGCTGCAGCTGGAAGGGAGGCCGAATTAAATATACAATTGGAGGATCATGTGCGTAAAGTTCATGACAGGGACATATTAAGTGGACAAGTGGTACAACTTCAGGAAGAACTGCATCTTGCCCACACCTCAATTGCAGAAAAAACTGTCTTGCAAACTCGTTTGGAGGAGCTTGAGAAACAATTAGTGATAGCTGAGGCTCAATTGAAAGAAGAGGTTGAAAGCGTTCGGGCAGCTGCTGTTGGAAGAGAGGCAGAATTAAGTACTCAATTGGAGGAGCACGCACGTAAAGTTCAAGATAGAGACTCCTTAAGTGAACAAGTAGTACAACTTCAAAAAGAGCTACATCTTGCTCAGACATCCATTGTCGAACAGAAGGAAACTCATTCTCAAAAAGAGTTGGAACGTGAGGCAGCAGCAAAGCATTTGCTTGAGGAGCTTGAAGCTAAGAAACAAGAACTCATACTTAAAGAGAACCAGGTTAAGGAACTAGAGCAGAAATTGCAGCTGGCTGAGGCTAAATCAAAAGAAAAGGCTGATGGAGGCAGTCCATCTGAGGGTATGGAGGTAAAATCCAGAGACATTGGGTTAGTTACCTCAACTCCATCAAGAAGGAAGAGCAAGAAAAAGTCAGAAGGAACTTCACCTCAAACCTCATCATCTTCAGAGATCCATGCTCGGGCCAATGAGGTTTCTTCTGCCATGACCCTTAAGTTTATCCTGGGTGTAGCCCTGGTGTCCGTGATCGTTGGCATAATTCTTGGAAAGCGATATTAG 3702 0.446 MKKMGELESELQVSAGDARKFEELHRESGSHAETETQRALEFERLLEVAKLSAKEMEDQMALLQEELKGLYEKIAENQKVEEALKTSVAELSSKEALINELRQELEDKSASEAQAKEDKSALEDLFSQTKADLEAKVLELQEVKLKLQEEVTVRESVEVGLKTQEAEVAKTQEELAEVTKEKEAFEAAVADLASNAARMQELCDDLETKLKQSDENFCKTDSLLSQALANNAELEEKLKSQEALHQETGTIASTATQKSIELEGLVQASNVAAEEAKAQLRELETRLIGAEQRNVELEQQLNLVELQSSEAERELKEFSEKMSELSVALREVEEEKKELKGQMQEYEDKITQLESALSQSSLEKSELGLELKSVAAKCTEHEDRANSTHQRSLELEDLMQLSHSKVEDAAKKATELELLLETEKYRIQELEEQISTLEKKCGDAEAASKKYLEQISDIEAELQISRAESKSLEKALELASETERDITERLNISIEVKKGLEEALSSSSEKLAEKENLLQVLQNELSLTQEKLQSIETDLKAAGVKESEIMEKLKSAEEQLEQQGRIIEQSTARSLELEELHETLKRDSEFKLNEAIASLSSRDSEAQSLYEKLKSHEDQVKTYELQVADTAEKSTSLKEELERCLGELAALQSTNEELKVKISEAESKAAESVSENELLVETNIELKSKVDELQEQLNSASAEKEATAHQLVSHRNTIVELTDQHSRSCELQSATEERVKEAEIQLEEAVQRFTHRDSEAKELNEKLTALESQIKVYEEQAHEASAISETRKVDLEQTLLKLKDLESVVEELQTKLGHFEKESEGLAEANLKLTQELAAYESKMNDLQEKLLTAFSEKDETVEQLQFSKKGIEDLRQQLATEGQKLQSQVSSVMEENNLLNETYQAAKNELQAVIIQLEGQLKEQKANEDAIKAEMENLKAEIADKSVLQTRLDELEKQLVLAEARLKEEVETVQAAAAGREAELNIQLEDHVRKVHDRDILSGQVVQLQEELHLAHTSIAEKTVLQTRLEELEKQLVIAEAQLKEEVESVRAAAVGREAELSTQLEEHARKVQDRDSLSEQVVQLQKELHLAQTSIVEQKETHSQKELEREAAAKHLLEELEAKKQELILKENQVKELEQKLQLAEAKSKEKADGGSPSEGMEVKSRDIGLVTSTPSRRKSKKKSEGTSPQTSSSSEIHARANEVSSAMTLKFILGVALVSVIVGIILGKRY* 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1242 1233 MobiDBLite consensus disorder prediction 1 37 - -
Vvi3g1242 1233 Coils Coil 39 80 - -
Vvi3g1242 1233 Coils Coil 84 118 - -
Vvi3g1242 1233 Coils Coil 760 787 - -
Vvi3g1242 1233 MobiDBLite consensus disorder prediction 1147 1200 - -
Vvi3g1242 1233 Coils Coil 497 538 - -
Vvi3g1242 1233 SUPERFAMILY Tropomyosin 270 539 - -
Vvi3g1242 1233 Coils Coil 1069 1096 - -
Vvi3g1242 1233 Coils Coil 641 710 - -
Vvi3g1242 1233 Coils Coil 732 752 - -
Vvi3g1242 1233 Coils Coil 890 973 - -
Vvi3g1242 1233 Coils Coil 795 857 - -
Vvi3g1242 1233 Coils Coil 413 475 - -
Vvi3g1242 1233 Coils Coil 1112 1156 - -
Vvi3g1242 1233 Coils Coil 550 587 - -
Vvi3g1242 1233 Coils Coil 224 244 - -
Vvi3g1242 1233 Coils Coil 130 150 - -
Vvi3g1242 1233 Coils Coil 606 633 - -
Vvi3g1242 1233 Coils Coil 1016 1050 - -
Vvi3g1242 1233 Coils Coil 154 216 - -
Vvi3g1242 1233 PANTHER EARLY ENDOSOME ANTIGEN 1020 1233 - -
Vvi3g1242 1233 Coils Coil 266 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1242 Vvi-Chr3 17828186 17832694 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1242 - K20283 vvi:100256869 2131.29