Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1241 ATGGTGATGAGGAGACTCTCACAGAGAAGCCCACTCCTCTTGACGGATCAAAATGGATTCACCAACACAAAATTCTTCAAATCCATTGAGTTTTCCACCTCAACACCCACCTCAGAAACCCTCAATTTTTCCCAGCAAATCTCAGATTTTCTCAAGCAAAACAACTGGAAAACCATCATGGTCTCATCCCACATCCCCTCCAAGCTAAACCCAGATGTGATTCGTGCCGTTCTTCATCAAAACCAGGTTGGTGACCCCAAACGCCTCCTAGATTTCTTCTACTGGTCCCAATCCCAAATGGGTGTCCCTCAGTTTCTGGATTCTTTCTCTATTCTTGCTGTTCAATTGTGTAATTCTGAGCTTTTTGGGCTTGCCAATGGGGTTTTGACACAAATGATCAGGACCCCTTATTCGAGCTCGTCGATTTTGGATTCTGTTCTTTTTTGGTTTAGGAATTATGGAGGGTCCAGTCCTGTAGTGTTTGATATATTGATTGATAGTTACAAGAGGATGGGCATGTTGGATGAGGCTGCTAACGTGTTTTTTGTAGCCAAAAATGATAGTATTTTGATCAGTTTGATTCGGTGTAATTCTTTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGAAGAGAAGTATGGGGGAGAAGGGATTGGTTCCAAATACATATACTTACACCATTATTACTGCTGGGTTATGCAGAGCAAAGAGAATGAATGAGGCAAAATTGACATTTGAAGAGATGCAAAAGACTGGTTTGAAGCCTGACTATAATGCTTGCTCAGCTTTGATTGATGGGTTCATGAGGGAGGGTGATATAGATGAAGTTCTAAGAATTAAGGACGTGATGGTTTCTTGTGGTATTCCAATAAATCTTATCACTTATAATGTACTTATTCATGGTCTGTGTAAGTTTGGAAAGATGGAGAAGGCGGCTGAAATTTTGAAAGGGATGATTACATTGGGGTGCAAACCCAATTCCCGAACTTTTTGTTTACTGATTGAAGGGTATTGCCGGGAGCATAATATGGGTCGGGCATTAGAGCTTCTTGATGAGATGGAGAAGAGGAACTTAGTTCCTAGTGCAGTGAGCTATGGTGCAATGATTAATGGGTTATGCCATTGCAAAGATCTCTCACTGGCTAATAAGCTTCTGGAGAAAATGACTTTCAGTGGTTTGAAACCAAATGTTGTTGTCTATAGTACTCTCATCATGGGTTATGCCAGTGAAGGTAGGATTGAAGAGGCGAGAAGGCTTTTAGATGGAATGAGCTGTAGTGGAGTTGCACCTGACATATTTTGCTACAATGCTATCATATCTTGTCTCAGCAAGGCTGGAAAGATGGAAGAAGCAAGCACGTATTTATTGGAAATACAAGGGAGGGGACTGAAGCCAGATGCTGTCACTTTTGGGGCTTTCATCCTTGGGTACAGCAAGACAGGCAAAATGACAGAAGCAGCTAAGTATTTTGATGAGATGCTTGATCATGGTTTGATGCCAAACAATCCGCTTTACACTGTTCTAATTAATGGGCACTTCAAAGCAGGAAACTTAATGGAAGCATTATCAATATTTCGACACTTACATGCCCTGGGGGTGCTTCCTGATGTCCAAACTTGCAGTGCCTTTATCCATGGCCTCTTGAAGAATGGGAGGGTTCAAGAGGCACTTAAGGTATTCTCAGAACTTAAAGAGAAGGGTTTGGTCCCAGATGTGTTCACTTACAGCTCTCTCATCTCAGGGTTCTGTAAGCAAGGTGAGGTAGAGAAAGCTTTCGAACTTCATGATGAGATGTGTCTGAAAGGTATTGCTCCAAATATTTTTATTTACAATGCATTGGTTGATGGACTGTGCAAATCTGGTGATATCCAAAGAGCTAGAAAACTGTTTGATGGAATGCCAGAGAAGGGTTTAGAACCTGACAGTGTAACCTACTCCACAATGATTGATGGATACTGCAAATCTGAAAATGTAGCTGAGGCATTTAGTTTATTTCATGAAATGCCATCCAAGGGGGTTCAACCACATAGTTTTGTCTATAATGCTCTTGTCCATGGGTGTTGCAAAGAAGGAGACATGGAGAAGGCTATGAATCTGTTTCGTGAAATGTTGCAGAAGGGCTTTGCTACTACCCTCTCTTTCAACACTTTAATTGATGGATACTGCAAGTCATGCAAAATACAAGAAGCGAGCCAATTGTTTCAAGAAATGATAGCTAAGCAGATCATGCCTGACCATGTGACCTACACAACTGTCATTGACTGGCATTGCAAGGCAGGAAAGATGGAGGAAGCAAACCTTCTCTTTAAGGAGATGCAGGAAAGAAATCTGATTGTTGACACTGTAACTTACACATCACTTATGTATGGATACAACAAATTAGGGCAATCATCTGAGGTCTTTGCATTGTTTGAGAAGATGGTGGCAAAGGGTGTCAAGCCAGATGAAGTCACTTATGGCCTAGTGATCTATGCTCATTGCAAAGAAGATAACTTGGTTGAGGCTTTTAAGTTGAGGGACGAGGTTGTGGGGAAAGGTATGCTGACTAAGGGAACTATTCACGATTTACTAATAACTGCTCTTTGCAAGAGAGAAGATCTTACTGAAGCCTCAAAGTTGCTTGATGAAATGGGAGAGCTAGGACTTAAGCCCAGTCTTGCTGCATGCAGTACTCTAGTCCGCAGTTTTCATGAAGCAGGCAAAATGGATGAAGCAACGCGGGTTTTTGAGGGTGTGAAGAGTTTAGGGTTGGTTCCTGACACCACTACTTTAATTGACTTAGTGAATGGAAATTTAAATGATACAGATTCTGAGGATGCCAGAAATCTTATAAAGCAATTAGTATGA 2925 0.4007 MVMRRLSQRSPLLLTDQNGFTNTKFFKSIEFSTSTPTSETLNFSQQISDFLKQNNWKTIMVSSHIPSKLNPDVIRAVLHQNQVGDPKRLLDFFYWSQSQMGVPQFLDSFSILAVQLCNSELFGLANGVLTQMIRTPYSSSSILDSVLFWFRNYGGSSPVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 597 631 IPR002885 -
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Vvi3g1241 974 Pfam PPR repeat family 561 610 IPR002885 -
Vvi3g1241 974 Pfam PPR repeat family 317 365 IPR002885 -
Vvi3g1241 974 Pfam PPR repeat family 491 537 IPR002885 -
Vvi3g1241 974 Pfam PPR repeat family 631 680 IPR002885 -
Vvi3g1241 974 Pfam PPR repeat family 806 854 IPR002885 -
Vvi3g1241 974 Pfam PPR repeat family 737 784 IPR002885 -
Vvi3g1241 974 Pfam PPR repeat family 386 430 IPR002885 -
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 737 770 IPR002885 -
Vvi3g1241 974 FunFam Pentatricopeptide repeat-containing protein At5g39710 584 686 - -
Vvi3g1241 974 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 882 973 - -
Vvi3g1241 974 Coils Coil 235 238 - -
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 806 840 IPR002885 -
Vvi3g1241 974 Gene3D Tetratricopeptide repeat domain 505 615 IPR011990 GO:0005515
Vvi3g1241 974 Gene3D Tetratricopeptide repeat domain 37 205 IPR011990 GO:0005515
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 632 666 IPR002885 -
Vvi3g1241 974 Pfam PPR repeat 286 314 IPR002885 -
Vvi3g1241 974 Pfam PPR repeat 159 181 IPR002885 -
Vvi3g1241 974 Pfam PPR repeat 460 489 IPR002885 -
Vvi3g1241 974 Pfam PPR repeat 242 275 IPR002885 -
Vvi3g1241 974 Pfam PPR repeat 697 729 IPR002885 -
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 667 701 IPR002885 -
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 702 736 IPR002885 -
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 876 910 IPR002885 -
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 911 945 IPR002885 -
Vvi3g1241 974 NCBIfam pentatricopeptide repeat 705 734 IPR002885 -
Vvi3g1241 974 NCBIfam pentatricopeptide repeat 773 806 IPR002885 -
Vvi3g1241 974 NCBIfam pentatricopeptide repeat 249 282 IPR002885 -
Vvi3g1241 974 NCBIfam pentatricopeptide repeat 389 423 IPR002885 -
Vvi3g1241 974 NCBIfam pentatricopeptide repeat 424 458 IPR002885 -
Vvi3g1241 974 NCBIfam pentatricopeptide repeat 881 911 IPR002885 -
Vvi3g1241 974 NCBIfam pentatricopeptide repeat 494 527 IPR002885 -
Vvi3g1241 974 NCBIfam pentatricopeptide repeat 285 317 IPR002885 -
Vvi3g1241 974 NCBIfam pentatricopeptide repeat 739 771 IPR002885 -
Vvi3g1241 974 NCBIfam pentatricopeptide repeat 669 701 IPR002885 -
Vvi3g1241 974 NCBIfam pentatricopeptide repeat 355 387 IPR002885 -
Vvi3g1241 974 NCBIfam pentatricopeptide repeat 635 668 IPR002885 -
Vvi3g1241 974 NCBIfam pentatricopeptide repeat 565 598 IPR002885 -
Vvi3g1241 974 NCBIfam pentatricopeptide repeat 599 633 IPR002885 -
Vvi3g1241 974 NCBIfam pentatricopeptide repeat 319 353 IPR002885 -
Vvi3g1241 974 NCBIfam pentatricopeptide repeat 531 563 IPR002885 -
Vvi3g1241 974 NCBIfam pentatricopeptide repeat 459 493 IPR002885 -
Vvi3g1241 974 NCBIfam pentatricopeptide repeat 808 842 IPR002885 -
Vvi3g1241 974 Gene3D Tetratricopeptide repeat domain 877 974 IPR011990 GO:0005515
Vvi3g1241 974 Gene3D Tetratricopeptide repeat domain 616 733 IPR011990 GO:0005515
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 841 875 IPR002885 -
Vvi3g1241 974 Coils Coil 200 200 - -
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 771 805 IPR002885 -
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Vvi3g1241 974 Pfam Pentatricopeptide repeat domain 898 946 IPR002885 -
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Vvi3g1241 974 SUPERFAMILY TPR-like 630 868 IPR011990 GO:0005515
Vvi3g1241 974 Gene3D Tetratricopeptide repeat domain 231 344 IPR011990 GO:0005515
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Vvi3g1241 974 SUPERFAMILY HCP-like 503 735 - -
Vvi3g1241 974 Gene3D Tetratricopeptide repeat domain 345 416 IPR011990 GO:0005515
Vvi3g1241 974 Gene3D Tetratricopeptide repeat domain 802 870 IPR011990 GO:0005515
Vvi3g1241 974 Gene3D Tetratricopeptide repeat domain 734 801 IPR011990 GO:0005515
Vvi3g1241 974 Gene3D Tetratricopeptide repeat domain 417 486 IPR011990 GO:0005515
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 596 IPR002885 -
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Vvi3g1241 974 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1241 Vvi-Chr3 17817420 17820344 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1241 562 974 Glycosyltransferase AT1G05670 31.325 8.44e-59 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1241 - K17964 vvi:100251738 1486.09