Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1237 ATGTCTGCTGATCATTTGCAGTTCTTGAAGAACAAGTTCATTCTGGACTTGAAAGAAGCGGAGGAGGAACACTCCGGGGAAAATGAGATCCCCCTTCTCTCTCGTTTTCAACAGATTAGAGATGCGTTGAAAGCAAAGGACATCACGGCATCTACATCCATCAGATTGAAGAATTGTCTATACAACGCCATCAGCGCATTAGAAGAGTGCGTGGTGTTGTCGGAGAAGCGTGAGCCCCGAAAGAAGAAGGATGGTCCGATGCATGGATACACTCTGGCGGAGCATTGGATTTTATGCAAAACCAGAAGGTTGTTGGTTCAAATATCGAGAAGGCTAACTGCTACAGCTGATGCGGTTATTCCTGGTATGACCGACATGGCCGTAAGTTCATCCTCCACCTCCTTACCACTCATTCCAAGACCAAACCCTGAGAATTTTGATCCCGACGATTTTCGAAGTTTTTATGTACAAAGAAATGAAATTATTGATCGACTTGAGAATACAGGGGATGGGTTTCAGGAAATCGGAATCGTGGGGATCGGGGGATCGGGTAAAACCACTCTGGCCCAATTGGTTTTTACTAAAATCGATGGGTATCTACGGGATAACAGAATTTGGATCTGCTTATTCCCGAAACTGAGTGGAGATGTGGACTTCAAGGAGATGATAAAAGACATGTTGAAGCAGTGCGGGGCAGCGTCTCGGGAAGTAGAAGTAGAAGAGCTGTTGGAGAATCTTGGGAAAGCTTTGAAGGGTAAAAGGTATTTGATGGTGTTGGACGGCATCTGGGACATCAACATCCACTGGTATTTCAAGTTAAAGGACAAGTTGAAGACTGTGAGTGGTGATGGTAATGGTGATGGGCATGTCATCATTACAAGCCGACTCCCCCACAAAGCAAGAATGATGGTGGGCCCTCACAATTTGTATCACATGCAACCTCCATTAGAATCCATGGAGCACATGTGGCAATTCAGTGGAACATTGGGTTTACTTGAAAGGTATAAGTTGAAATTGAAGGATGAGGTTATAGAGCAATGTGATGGCCTCCCATTAGCAATGCACACATTGGCACCAGTGATTGACGACCAGATCCTGGGAGACAGGTATTTATTTTTTATTGAACCTGATCCGATGGTGTTGGTCAACCTTGAAGATGATGCTATATTGGGAAATGAGCTTTTGTTATCATGGCGTGGCATCTCACTTAATGAAAATATGGTGATAGATGTATCAAAGCTTCTTCTTCATGATGTATTCAACAAAGTCCATCAATATATTCTATCATCATGGGAATCAAGATTTAGGACGATAATAGTAAGTTGA 1326 0.4336 MSADHLQFLKNKFILDLKEAEEEHSGENEIPLLSRFQQIRDALKAKDITASTSIRLKNCLYNAISALEECVVLSEKREPRKKKDGPMHGYTLAEHWILCKTRRLLVQISRRLTATADAVIPGMTDMAVSSSSTSLPLIPRPNPENFDPDDFRSFYVQRNEIIDRLENTGDGFQEIGIVGIGGSGKTTLAQLVFTKIDGYLRDNRIWICLFPKLSGDVDFKEMIKDMLKQCGAASREVEVEELLENLGKALKGKRYLMVLDGIWDINIHWYFKLKDKLKTVSGDGNGDGHVIITSRLPHKARMMVGPHNLYHMQPPLESMEHMWQFSGTLGLLERYKLKLKDEVIEQCDGLPLAMHTLAPVIDDQILGDRYLFFIEPDPMVLVNLEDDAILGNELLLSWRGISLNENMVIDVSKLLLHDVFNKVHQYILSSWESRFRTIIVS* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1237 441 PRINTS Disease resistance protein signature 347 361 - -
Vvi3g1237 441 PRINTS Disease resistance protein signature 174 189 - -
Vvi3g1237 441 PRINTS Disease resistance protein signature 249 263 - -
Vvi3g1237 441 Gene3D - 142 311 IPR027417 -
Vvi3g1237 441 PANTHER DISEASE RESISTANCE PROTEIN RP 147 358 IPR044974 GO:0006952
Vvi3g1237 441 Pfam NB-ARC domain 159 360 IPR002182 GO:0043531
Vvi3g1237 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 360 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1237 Vvi-Chr3 17747901 17751010 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1237 - - vvi:100852931 876.7