Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1231 ATGTTGCGAAAATTTGGACTCTCTGTTGATCATATTGTGGATGCCCAGATAGTCAATGTTAATGGCAGTATTCTCGATCGAAAGTCCATGGGAGAAGACCTCTTTTGGGCCATTAGAGGAGGTGGTGGAGCTAGCTTTGGAGTCATATTGTCATATAAGATCAAGCTTGTTCGAGTGCCCGAAATTGTTACAGTTTTTCGGGTCGAGAAGACCTTGGCCCAAAATGCCACTGACATTGCCTATCAATGGCAGCATATCACTGACAAGATCGATAATGATCTTTTCATTAGGCTTCTCCTCCAACCTATCACTGTGAAGAACGACAATGGATCGGCCAAGGCCGAGAAAAGCACAAAGACTGTTAAGGTAAGCTTTACATCACTGTTTCTAGGAGACGCAACCCGTCTCATTTCAGTGATGAACAAGGATTTCCCAGAATTAGGGTTAAAGAAAGAGGACTGCATAGAAATGAACTGGATTGAATCAGTCCTCTACTGGGCTAATTTTGATAATGGAACATCAGTGAATGTTCTGCTAAACCGGACTCCAGAGTCAGTGAAGTTCTTGAAGAGGAAGTCGGACTACGTGCAGAAACCCATATCCAAGGATGGTCTAGAAGGGCTCTGGAAGAAGATAATTGAATTAGGCAAAGCAGGGATGGTTCTCAATCCATACGGAGGGCGAATGAGTGAAATCCCTGCATCTGAAACCCCCTTCCCACATCGATCTGGGAACATATTCAAGATCCAGTACTCAGTGACTTGGCAAGAAGAAGGGACTGAAGCAGACAAGATGTATGTGAACTCCATGAGAGAGCTCTATAGCTACATGACCCCTTATGTGTCCAAGTCCCCTAGAGGTTCATATCTCAACTATAGAGATATTGACATTGGTATTAGCCACAATGGTAAAGATAGCTACCAAGAAGGTAAGGTATATGGGGTCAAGTACTTCATGAACAATTTTGACAGGTTGGTAAAAGTGAAGACTGCTGTGGACCCTCAGAATTTTTTCAGGTATGAACAAAGCATCCCACCGCTTCCTTATTAA 1050 0.4333 MLRKFGLSVDHIVDAQIVNVNGSILDRKSMGEDLFWAIRGGGGASFGVILSYKIKLVRVPEIVTVFRVEKTLAQNATDIAYQWQHITDKIDNDLFIRLLLQPITVKNDNGSAKAEKSTKTVKVSFTSLFLGDATRLISVMNKDFPELGLKKEDCIEMNWIESVLYWANFDNGTSVNVLLNRTPESVKFLKRKSDYVQKPISKDGLEGLWKKIIELGKAGMVLNPYGGRMSEIPASETPFPHRSGNIFKIQYSVTWQEEGTEADKMYVNSMRELYSYMTPYVSKSPRGSYLNYRDIDIGISHNGKDSYQEGKVYGVKYFMNNFDRLVKVKTAVDPQNFFRYEQSIPPLPY* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1231 349 Pfam Berberine and berberine like 288 345 IPR012951 GO:0016491|GO:0050660
Vvi3g1231 349 Gene3D - 1 346 IPR016169 -
Vvi3g1231 349 Gene3D - 62 284 - -
Vvi3g1231 349 SUPERFAMILY FAD-binding/transporter-associated domain-like 4 60 IPR036318 GO:0050660
Vvi3g1231 349 PANTHER OS08G0158400 PROTEIN 1 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1231 Vvi-Chr3 17636681 17637730 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1231 1 348 Miscellaneous Gene Families AT1G01980 60.286 5.18e-152 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1231 - - vvi:100264985 633.639