Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1230 ATGAGTGAAATCCCCGCATCCGAAACCCCCTTCCCTCACCACGCTGGGAACATATTCAAGATCCAATACTCGGTGAGTTGGAAAGAAGAAGGGGCTGAAGCAGACAAGAAGTATCTAAATTTGATAAGAGAGCTTTATAGCTACATGACCCCTTTTGTGTCCAACTCTCCTAGAGGTGCATATCTCAACTATAGAGATATTGATATTGGTATCAGCCACAATGGTATAGATAGCTACGAAGAGGGTAAAGTATATGGGGCTAAGTACTTTATGAACAATTTTGACAGGTTGGTGAAAGTGAAGACTGTTGTGGACCCTCAGAATTTTTTCAGTTGCCACCCTAGGACCATGTGTATGCATGTTGTATGGTTGTCTTTTAAGGTTCTATCTTGTGTCCTTCATCTCTTTTGTTTGCATTGTAGGGAGTCAGTTTAG 435 0.4161 MSEIPASETPFPHHAGNIFKIQYSVSWKEEGAEADKKYLNLIRELYSYMTPFVSNSPRGAYLNYRDIDIGISHNGIDSYEEGKVYGAKYFMNNFDRLVKVKTVVDPQNFFSCHPRTMCMHVVWLSFKVLSCVLHLFCLHCRESV* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1230 144 Gene3D - 57 111 IPR016169 -
Vvi3g1230 144 Gene3D - 1 56 - -
Vvi3g1230 144 PANTHER OS08G0158400 PROTEIN 1 112 - -
Vvi3g1230 144 Pfam Berberine and berberine like 60 111 IPR012951 GO:0016491|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1230 Vvi-Chr3 17605998 17606618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1230 1 110 Miscellaneous Gene Families AT1G30730 59.091 2.78e-41 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1230 - - vvi:100264985 207.223