Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi3g1229 | ATGGCAAATGTTGGGCCTGACTCTAATGGATCGCAATTCTTCATTACAATAGTAGCAACTCATTGGTTGGATGGCAAACATGTTGTGTTTGACAAGGTGCTTTCTAGGATGAAGGTGGTGTATAAAATTAAAGAGTTGGCACATGGAAATGGCTAG | 156 | 0.4038 | MANVGPDSNGSQFFITIVATHWLDGKHVVFDKVLSRMKVVYKIKELAHGNG* | 52 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi3g1229 | 51 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 1 | 51 | IPR002130 | GO:0000413|GO:0003755 | |
| Vvi3g1229 | 51 | SUPERFAMILY | Cyclophilin-like | 1 | 50 | IPR029000 | - | |
| Vvi3g1229 | 51 | Gene3D | - | 1 | 51 | IPR029000 | - | |
| Vvi3g1229 | 51 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 1 | 48 | - | - | |
| Vvi3g1229 | 51 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 12 | 24 | IPR002130 | GO:0000413|GO:0003755 | |
| Vvi3g1229 | 51 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 25 | 40 | IPR002130 | GO:0000413|GO:0003755 | |
| Vvi3g1229 | 51 | FunFam | Peptidyl-prolyl cis-trans isomerase | 1 | 51 | - | - | |
| Vvi3g1229 | 51 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 1 | 47 | IPR002130 | GO:0000413|GO:0003755 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi3g1229 | Vvi-Chr3 | 17582150 | 17582305 | Proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi3g1229 | K01802 | - | vvi:100241683 | 88.1965 |