Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi3g1224 | ATGGCAAATACTGGGCTTGACTCCAATGGATCGCGATTCTTCATTACAATAGTAGCAACTCATTGGTTGGATGGCAGACATGTTGTGTTTGACAAGGTGCTTTCTAGGATGGAGGTGGTCTACAAAATTAAAGAGTTGGCACATGAAAATGGCTACAGAAAAATGATTGTTGTTGAGGAAGACGACACCACATGCCTTTGGTGGGCCATTCTTGGAGCATAA | 222 | 0.4279 | MANTGLDSNGSRFFITIVATHWLDGRHVVFDKVLSRMEVVYKIKELAHENGYRKMIVVEEDDTTCLWWAILGA* | 74 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi3g1224 | 73 | Gene3D | - | 1 | 64 | IPR029000 | - | |
| Vvi3g1224 | 73 | FunFam | Peptidyl-prolyl cis-trans isomerase | 1 | 65 | - | - | |
| Vvi3g1224 | 73 | SUPERFAMILY | Cyclophilin-like | 1 | 54 | IPR029000 | - | |
| Vvi3g1224 | 73 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 1 | 50 | IPR002130 | GO:0000413|GO:0003755 | |
| Vvi3g1224 | 73 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 12 | 24 | IPR002130 | GO:0000413|GO:0003755 | |
| Vvi3g1224 | 73 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 25 | 40 | IPR002130 | GO:0000413|GO:0003755 | |
| Vvi3g1224 | 73 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 1 | 54 | IPR002130 | GO:0000413|GO:0003755 | |
| Vvi3g1224 | 73 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 1 | 55 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi3g1224 | Vvi-Chr3 | 17536174 | 17536395 | Proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi3g1224 | K01802 | - | vvi:100241683 | 85.1149 |