Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1221 ATGACACTCAATCTCACAATGAAGCAGGCTGCCCATCTCCAACAAAGGAACTTGCTCTCTCTTCTTCTTCAACACCAAATCAGACGCAGTGCAATGCAACAACTCCACTCTCACTTGATCACCACTGGTGCACATTCCCACTGTATGGATGTTACATCTTGGAACGTTTTGCTTCGACACTATTCTCTTGTCATCTTCCCCCAAGAAGCTTTCTTGCTCTTCAGGCACCTCCGCCTCCATCATGTCTCTCCTCCACTCTCCTTCGACAGTTTCACCTTTTCTTTCCTTCTCAAGGCATGCGCTAATCTACAGCACCGCGAGGGAGGACTTCAACTCCATGCTCTTACTTTTAAGCTTGGATTTGAATTTCATGTCTATGTACACACTGTTATGCTAAACGTGTATGCAGCCAGTGGGGCTTTTCTTGAAGCCAAGCAAGTGTTCGATGAAATGCCGGCTGTAAACATGGTCAAGAAGATGCCAGCTTACAAAAATAGGCTGTGGTCATTAGAACTTGAGCACACTGGAGTTAAGACAGGGCGATTCATGTTTTTTGGCAGGAAAATGGAGGAAGAGCTCAGCAAAGAACTTGAACTGCAGATGAAGGGGGCTAAAAAAACCCTCTATATATGGGAACTTATTGGTGTCCATATTGTACTCCTACCTTTGGCACCTCCGCCTCCATCATGTCTCTCCTCCACCTTCAACAGTTTCTCCTTTTCTTTCCTTCTCAAGGCATGCGCTTATCTACAGCACCGCAAGGGAGGACTTCAACTCCATGCTCTTACTCTTAAGGCTGGATTTGAATTTCATGTCTATTTACATACTGTTTTGCTAAACGTGTATGCAGTCTGTGGGGCTTTACTTGAAGCTAAGCAAGTGCTCGATGAAATGCCTGTAAGAAACTCTGTCACTTGGAATGTATTGATTACTGGTCTAGCCAAATGGGGTGAGCTTCATCTTGCTCGTTCTCTTTTTGATGAGATGCCAATGCCAACAGTTGTTTCATGGACTACTATTATTGACGGATACACTCGGATGAACCAACCAAAGCAAGCTCTAGCTTTGTTCCGCACTATGTTTATAGATGAGGGTATCAAACCTACTGAAATAGCACTTTTAGCCATTTTCCCAGCCATTTCAAATCTTGGGGCTCTTGAGCTTTGCCAATTGGTCCACATTCATGGAGGATTGGTTGAGGAGGGGCGGCTCAAGTTTTTCGCAAAGATGGTTAATGAATATCAAATGTCGCCAGATGTTAAGCATTATGGAGGCTTAATTGACATGTTGGGCAGGGCTGGGAGGCTAGATGAAGCAGAAAAGATGGCTTTGGAGTTTCCTGATGATGTGGTTAATGTTGTAATTTGGAGAACGCTTTTGGGTGCTTGCAGCTTTCATGGTAATGTTGAGATGGGCGCAAGAGTGACAAGGAAGATATTAGAGATGGAGAGAAAATATGGGGGGGATTATGTCCTTTTGTCCAACATCTTTGCTGGTGTTGGAAGGTTTTGGGATGTTGAGAGGGTGAGAAGATTGATGGATGAGAGGAATGCCTCTAAACTTCCAGGACTGAGTTTGGTCTGA 1584 0.4444 MTLNLTMKQAAHLQQRNLLSLLLQHQIRRSAMQQLHSHLITTGAHSHCMDVTSWNVLLRHYSLVIFPQEAFLLFRHLRLHHVSPPLSFDSFTFSFLLKACANLQHREGGLQLHALTFKLGFEFHVYVHTVMLNVYAASGAFLEAKQVFDEMPAVNMVKKMPAYKNRLWSLELEHTGVKTGRFMFFGRKMEEELSKELELQMKGAKKTLYIWELIGVHIVLLPLAPPPPSCLSSTFNSFSFSFLLKACAYLQHRKGGLQLHALTLKAGFEFHVYLHTVLLNVYAVCGALLEAKQVLDEMPVRNSVTWNVLITGLAKWGELHLARSLFDEMPMPTVVSWTTIIDGYTRMNQPKQALALFRTMFIDEGIKPTEIALLAIFPAISNLGALELCQLVHIHGGLVEEGRLKFFAKMVNEYQMSPDVKHYGGLIDMLGRAGRLDEAEKMALEFPDDVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMERKYGGDYVLLSNIFAGVGRFWDVERVRRLMDERNASKLPGLSLV* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1221 527 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 214 329 - -
Vvi3g1221 527 Gene3D Tetratricopeptide repeat domain 393 526 IPR011990 GO:0005515
Vvi3g1221 527 Gene3D Tetratricopeptide repeat domain 14 167 IPR011990 GO:0005515
Vvi3g1221 527 Gene3D Tetratricopeptide repeat domain 230 392 IPR011990 GO:0005515
Vvi3g1221 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 368 IPR002885 -
Vvi3g1221 527 FunFam Pentatricopeptide repeat-containing protein, mitochondrial isoform A 229 398 - -
Vvi3g1221 527 NCBIfam pentatricopeptide repeat 304 329 IPR002885 -
Vvi3g1221 527 NCBIfam pentatricopeptide repeat 335 370 IPR002885 -
Vvi3g1221 527 Pfam E motif 466 527 IPR046848 -
Vvi3g1221 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 332 IPR002885 -
Vvi3g1221 527 Pfam PPR repeat 304 329 IPR002885 -
Vvi3g1221 527 Pfam PPR repeat 423 442 IPR002885 -
Vvi3g1221 527 Pfam PPR repeat 335 360 IPR002885 -
Vvi3g1221 527 Pfam PPR repeat 276 301 IPR002885 -
Vvi3g1221 527 Pfam PPR repeat 128 152 IPR002885 -
Vvi3g1221 527 Coils Coil 187 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1221 Vvi-Chr3 17489219 17493481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1221 49 527 Glycoside Hydrolase AT3G49170 27.112 1.04e-41 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1221 - - vvi:100852442 375.555