Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1220 ATGTCAAGGTCTTCCTTTCGTCTGCTACTTCTCCTTCTTGGTTTTCTTCTTGTTTCATCATATGCAGCTTCAGATTCAGTATATGATACCTTTGTTCAATGCCTATCAAACCATTCAGCCCCATCTCACCAAGCTTCATCAATAGTCTACGCCCAAACAAATTCTTCATTCACAAATGTGCTTCGATCTTATATCCGAAACGAACGGTTCAACACATCTTCCACGCCCAAACCCTTGATCATTGTCACCCCCTCGGATGAATCCCAAGTCCAGGCTGCCATAATTTGCTCTAGAGACATCGGCATACTGCTAAAAATCCGAAGTGGTGGCCATGACTACGATGGCCTATCTTCTGTCTCTGATGTCCCATTTTTCATCCTTGATATGTTCAATCTTCGGTCCATCAACGTGAATATCACTGATGAAACTGCTTGGGTTCAAGCTGGTGCTACCCTAGGAGAACTCTACTACAGAATTTGGGAGAAAAGCAGAGTCCATGGATTTCCAGCTGGGGTTTGCCCCACTCTGGGTGTAGGCGGGCACTTGAGTGGTGGGGGCTATGGTAATATGTTGCGAAAATATGGACTCTCTATTGATCATATTGTGGATGCCCAGATAATCAATGTTAATGGCAGCATTCTCGATCGAAAGTCCATGGGAGAAGACCTCTTTTGGGCCATTAGAGGAGGTGGCGGAGCTAGCTTTGGAGTCATATTGTCATATAAGGTCAAGCTTGTCCGAGTGCCCGAAATTGTTACAGTTTTTCGGGTCGAGAAGACCCTGGCCCAAAACGCCACTGACTTAGTCTATCAGTGGCAGCACATCACTGACAAGATCGATAATGATCTTTTCATGAGGCTTCTCCTCCAACCTATCACGGTGAAAAGCGACAATGGGTCCTCCAAGACTGTTAGGGTGACCTTCATATCACTGTTTCTTGGAGACGCGACCCGTCTCATTTCAGTGATGAACAAGGATTTCCCAGAATTAGGGCTAAAGAAAGAGGACTGCAAGGAAATGAGCTGGATTGAATCAGTCCTCTACTGGGCTAATTTCGATAACAGAACATCAGTGAATGTTCTGCTAAACCGGACCCTAGAGTCAGTGAAATTCTTTAAGGCGAAGTCAGACTACATGCAGAAACCCATGTCCAAGGATGGTCTAGAAGGGCTGTGGAAGAAGATGATTGAATTAGGCAAACCAGGGATGGTGTTCAATTCATACGGAGGGCGAATGAGTGAAATCCCCGCATCTGAAACCCCCTTCCCACATCGCGCTGGGAACATATTCAAGATCCAGTACTCAGTGAATTGGCATGAAGAAGGGACTGAAGCAGACAAGAAGTATGTGAACTTGATAAGAGAGCTTCATAGCTACATGACCCCACTTGTGTCCAAGTCCCCTAGAGGTTCATATCTCAACTATAGAGATATTGATATTGGTATTAGCCACAATGGTAAAGATAGCTACCAAGAAGGTAAGGTATATGGGGTTAAGTACTTTATGAACAATTTTGACAGGTTGGTGAAAGTGAAGACTGCTGTGGACCCTCAGAATTTTTTCAGTAGCATCTGTATTACTTTTGCTAGTAGCATCTCTATTAAAAGTGCATTTAAAAGCATTAGTTCCGTATTTTAA 1638 0.4408 MSRSSFRLLLLLLGFLLVSSYAASDSVYDTFVQCLSNHSAPSHQASSIVYAQTNSSFTNVLRSYIRNERFNTSSTPKPLIIVTPSDESQVQAAIICSRDIGILLKIRSGGHDYDGLSSVSDVPFFILDMFNLRSINVNITDETAWVQAGATLGELYYRIWEKSRVHGFPAGVCPTLGVGGHLSGGGYGNMLRKYGLSIDHIVDAQIINVNGSILDRKSMGEDLFWAIRGGGGASFGVILSYKVKLVRVPEIVTVFRVEKTLAQNATDLVYQWQHITDKIDNDLFMRLLLQPITVKSDNGSSKTVRVTFISLFLGDATRLISVMNKDFPELGLKKEDCKEMSWIESVLYWANFDNRTSVNVLLNRTLESVKFFKAKSDYMQKPMSKDGLEGLWKKMIELGKPGMVFNSYGGRMSEIPASETPFPHRAGNIFKIQYSVNWHEEGTEADKKYVNLIRELHSYMTPLVSKSPRGSYLNYRDIDIGISHNGKDSYQEGKVYGVKYFMNNFDRLVKVKTAVDPQNFFSSICITFASSISIKSAFKSISSVF* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1220 545 Pfam Berberine and berberine like 471 522 IPR012951 GO:0016491|GO:0050660
Vvi3g1220 545 Pfam FAD binding domain 78 214 IPR006094 GO:0050660
Vvi3g1220 545 Gene3D - 136 522 IPR016169 -
Vvi3g1220 545 Gene3D - 251 467 - -
Vvi3g1220 545 PANTHER OS08G0158400 PROTEIN 24 522 - -
Vvi3g1220 545 ProSiteProfiles PCMH-type FAD-binding domain profile. 74 248 IPR016166 GO:0071949
Vvi3g1220 545 SUPERFAMILY FAD-binding/transporter-associated domain-like 23 249 IPR036318 GO:0050660
Vvi3g1220 545 Gene3D - 26 132 IPR016167 -
Vvi3g1220 545 FunFam Berberine bridge enzyme-like 15 26 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1220 Vvi-Chr3 17484861 17486763 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1220 26 521 Miscellaneous Gene Families AT1G01980 57.738 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1220 - - vvi:100264985 1028.85